YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996995, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996995, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737877, gi\|... - gi\|42781953\|ref\|NP_979200.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase...	187.0	[0..3]	[218..1]
gi\|49179606, gi\|... - gi\|49185679\|ref\|YP_028931.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase...	184.0	[0..3]	[218..18]
gi\|47528161, gi\|... - gi\|47528161\|ref\|YP_019510.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase... gi\|30257463, gi\|... - gi\|30262830\|ref\|NP_845207.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase... gi\|21400763, gi\|... - gi\|65320157\|ref\|ZP_00393116.1\| COG0775: Nucleoside phosphorylase [Bacillus anthracis str. A2012], re... gi\|229220842 - gi\|229220842\|ref\|YP_028931.2\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidas...	184.0	[0..3]	[218..1]
MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans (strain ATCC BAA-1... MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans GN=mtnN PE=3 SV=1	181.0	[0..3]	[220..1]
MTNN_HISS2 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Histophilus somni (strain 2336) GN=mtn...	181.0	[0..4]	[220..1]
MTNN_HAES1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=m...	181.0	[0..4]	[220..1]
gi\|48826037 - ref\|ZP_00287265.1\| COG0775: Nucleoside phosphorylase [Enterococcus faecium] gi\|68196161, gi\|... - gi\|69244807\|ref\|ZP_00603031.1\| Purine and other phosphorylases, family 1 [Enterococcus faecium DO], ...	180.0	[0..4]	[221..1]
gi\|46128809 - gi\|46128809\|ref\|ZP_00201937.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2846]	179.0	[0..4]	[220..1]
gi\|25329858 - pir\|\|H97160 nucleoside phosphorylase [imported] - Clostridium acetobutylicum gi\|15895386, gi\|... - gi\|15895386\|ref\|NP_348735.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridium...	179.0	[0..4]	[217..1]
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	178.0	[0..4]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPTTIGLIA AMPDETRPLL RRLRGATLLA QQPFPLWRAQ VGDADIWLAQ SGMGPKRAES  60
   61 VAERFAEVAS PDVMVSFGFG GGVLPGLSVG DLVMGTWCLH YDGRDFTLVA GIDAPLACSV 120
  121 MKALAQRTSL AVTAGTVITS GAILAKHLVA PLIPAAVTSP VLDMETAAVA SISAQRGIPL 180
  181 LALRAITDDA AEEFGFSLDE FTDAELNIKP YRVVTTLLRK PWIMPQLIRL ARSSKRAGEL 240
  241 LASAVIELVE VLPATTRCTP SYSFAQRPET ADQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	1cb0A
Description:	5'-deoxy-5'-methylthioadenosine phosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.55312579852314	bayes_pls_golite062009
transferase activity	0.844143361741522	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.772452031247376	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.518386217953827	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: