YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996981, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996981, gi|....

Description	E-value	Query Range	Subject Range
gi\|110800606, gi... - gi\|110800606\|ref\|YP_695269.1\| PTS system mannose/fructose/sorbose family IIB subunit [Clostridium pe... gi\|170712668, gi... - gi\|170712668\|gb\|EDT24850.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|177909134, gi... - gi\|182625582\|ref\|ZP_02953352.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostrid...	156.0	[0..1]	[130..1]
gi\|168212543, gi... - gi\|170716130\|gb\|EDT28312.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|168216303, gi... - gi\|182381729\|gb\|EDT79208.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|169299356, gi... - gi\|169342584\|ref\|ZP_02863636.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostrid... gi\|168208105, gi... - gi\|170660607\|gb\|EDT13290.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|18309803, gi\|... - gi\|18309803\|ref\|NP_561737.1\| PTS system [Clostridium perfringens str. 13], gi\|18144481\|dbj\|BAB80527....	156.0	[0..1]	[130..1]
gi\|110682688, gi... - gi\|110802187\|ref\|YP_698129.1\| PTS system mannose/fructose/sorbose family IIAB subunit [Clostridium p...	155.0	[0..1]	[130..1]
gi\|29374679, gi\|... - gi\|29374679\|ref\|NP_813831.1\| PTS system, mannose-specific IIAB components [Enterococcus faecalis V58...	153.0	[0..1]	[130..1]
gi\|23100830, gi\|... - gi\|23100830\|ref\|NP_694297.1\| PTS system mannose-specific enzyme II AB component [Oceanobacillus ihey...	152.0	[0..1]	[130..1]
gi\|14994382, gi\|... - gi\|15004770\|ref\|NP_149230.1\| mannose-specific phosphotransferase system component IIAB [Clostridium ...	152.0	[0..1]	[130..1]
gi\|150015597, gi... - gi\|82746433\|ref\|ZP_00908939.1\| PTS system fructose subfamily IIA component [Clostridium beijerincki ...	152.0	[0..1]	[130..1]
gi\|48823991 - ref\|ZP_00285437.1\| COG2893: Phosphotransferase system, mannose/fructose-specific component IIA [Ente... gi\|68194264, gi\|... - gi\|69249169\|ref\|ZP_00604891.1\| PTS system fructose subfamily IIA component:PTS system sorbose subfam...	151.0	[0..1]	[130..1]
gi\|90961631, gi\|... - gi\|90961631\|ref\|YP_535547.1\| PTS system, mannose-specific IIAB component [Lactobacillus salivarius U...	149.0	[0..1]	[130..1]
gi\|48870212, gi\|... - gi\|48870212\|ref\|ZP_00322939.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	149.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLVLVTHA GLAKELLKAA EMIVGPIEEA QAIGIEQGDQ VEGIMDRISA AVKQVSGNGA  60
   61 IIMTDMFGGT PSNMSLSFLE GERVEVLTGV NLPMVIKFAS DRQRATVAEL AGSLRDCGRE 120
  121 SIAVAGDYLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.045757
Match:	1pdoA
Description:	PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	2.88637330154375	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	1.96301338707837	bayes_pls_golite062009
binding	0.63165281523733	bayes_pls_golite062009
transporter activity	0.138487494995815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: