YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996958, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996958, gi|....

Description	E-value	Query Range	Subject Range
gi\|48845424, gi\|... - gi\|78222522\|ref\|YP_384269.1\| thiamine pyrophosphate enzyme, C-terminal TPP-binding [Geobacter metall...	196.0	[0..1]	[247..1]
gi\|220931523, gi... - gi\|89210669\|ref\|ZP_01189056.1\| Thiamine pyrophosphate enzyme, C-terminal TPP-binding [Halothermothri...	190.0	[0..1]	[247..2]
gi\|88916205, gi\|... - gi\|88937046\|ref\|ZP_01142633.1\| keto/oxoacid ferredoxin oxidoreductase, alpha subunit [Geobacter uran...	189.0	[0..1]	[247..1]
gi\|78044112, gi\|... - gi\|78044112\|ref\|YP_359432.1\| putative keto/oxoacid ferredoxin oxidoreductase, beta subunit [Carboxyd...	189.0	[0..1]	[247..1]
gi\|241879879, gi... - gi\|241907707\|ref\|ZP_04792283.1\| thiamine pyrophosphate protein domain protein TPP-binding [Desulfovi... gi\|120601097, gi... - gi\|120601097\|ref\|YP_965497.1\| thiamine pyrophosphate binding domain-containing protein [Desulfovibri...	188.0	[0..4]	[246..13]
gi\|71542110, gi\|... - gi\|71542110\|ref\|ZP_00663778.1\| Pyruvate decarboxylase [Syntrophomonas wolfei str. Goettingen], gi\|71...	187.0	[0..1]	[242..1]
gi\|46581749, gi\|... - gi\|46581749\|ref\|YP_012557.1\| pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative [...	186.0	[0..8]	[246..2]
gi\|76588118, gi\|... - gi\|76796536\|ref\|ZP_00778896.1\| Thiamine pyrophosphate enzyme, C-terminal TPP-binding [Thermoanaeroba... gi\|241903968, gi... - gi\|241903968\|ref\|ZP_04788682.1\| thiamine pyrophosphate protein domain protein TPP-binding [Thermoana... gi\|242257458, gi... - gi\|242257458\|ref\|ZP_04802322.1\| thiamine pyrophosphate protein domain protein TPP-binding [Thermoana... gi\|114844197, gi... - gi\|167039595\|ref\|YP_001662580.1\| thiamine pyrophosphate binding domain-containing protein [Thermoana...	185.0	[0..1]	[246..1]
gi\|78355092, gi\|... - gi\|78355092\|ref\|YP_386541.1\| pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative [...	183.0	[0..4]	[245..11]
gi\|149951850, gi... - gi\|77683378\|ref\|ZP_00798827.1\| Thiamine pyrophosphate enzyme, C-terminal TPP-binding [Alkaliphilus m...	181.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQVFKKPVS LKDVQTHFCP GCHHGTFHRL VAEAMDEFGV QKKTIGVASV GCSVFLYGYF  60
   61 DIDVVEAPHG RAPAVATGVK RARPDAFVFT YQGDGDLAAI GTSEIIHAAN RGEDITVIFV 120
  121 NNTTYGMTGG QMAPTTLVGQ RTSTSPYGRK NEKDGSPIRM AELLAQLEGV AFSARVAVNN 180
  181 PKNLMDAKRQ IKKAFRYQAE GKGFSFIEAL SSCPTNWGMD ALAANERVGT EMCAYFPLGV 240
  241 FKNTAQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1ybhA
Description:	Crystal structure of Arabidopsis thaliana Acetohydroxyacid synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits