YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996957, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996957, gi|....

Description	E-value	Query Range	Subject Range
gi\|67875716, gi\|... - gi\|67875716\|ref\|ZP_00504932.1\| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding domain:...	184.0	[0..3]	[176..416]
gi\|78193778, gi\|... - gi\|78222523\|ref\|YP_384270.1\| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter metallireducen...	184.0	[0..1]	[179..1]
gi\|20806954 - gi\|20806954\|ref\|NP_622125.1\| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi... gi\|20515433, gi\|... - gi\|20806954\|ref\|NP_622125.1\| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi...	180.0	[0..4]	[176..418]
KORC_METJA - 2-oxoglutarate synthase subunit KorC OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 ... KORC_METJA - 2-oxoglutarate synthase subunit korC OS=Methanocaldococcus jannaschii GN=korC PE=3 SV=1	179.0	[0..1]	[176..8]
gi\|4972238 - gi\|4972238\|emb\|CAB43933.1\| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]	178.0	[0..3]	[174..417]
gi\|7482800 - gi\|7482800\|pir\|\|G69099 probable pyruvate synthase (EC 1.2.7.1) gamma chain - Methanobacterium thermo... gi\|2622871, gi\|1... - gi\|2622871\|gb\|AAB86210.1\| pyruvate oxidoreductase, gamma subunit [Methanothermobacter thermautotroph...	177.0	[0..3]	[176..2]
gi\|77683865, gi\|... - gi\|77683865\|ref\|ZP_00799307.1\| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Alkaliphilus metalli...	177.0	[0..3]	[176..417]
gi\|242229946, gi... - gi\|242258533\|ref\|ZP_04803322.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo... gi\|114805431, gi... - gi\|167039047\|ref\|YP_001662032.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro...	176.0	[0..4]	[176..418]
gi\|241882973, gi... - gi\|241904660\|ref\|ZP_04789336.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo... gi\|166857070, gi... - gi\|76796659\|ref\|ZP_00779015.1\| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermoanaerobacter e...	176.0	[0..4]	[176..418]
gi\|158141179, gi... - gi\|158320980\|ref\|YP_001513487.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro...	175.0	[0..3]	[176..417]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHDVFIAGF GGQGVLLAGN ILGQAAIIEG KNVSFFPSYG VEKRGGAAMC TVVIADDEVG  60
   61 SPVIGSPSVA VILNQASFDK FFARVKTGGL CIVNSSLVDV PAGMRSDITV VAIPMNDIAV 120
  121 DLGDPRMVNM VALGAYAART GAVSLQSLED ALKETLPERN HRFIPANVKA IAAGAGYGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.154902
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits