YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996916, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996916, gi|....

Description	E-value	Query Range	Subject Range
gi\|217328611, gi... - gi\|217328611\|ref\|ZP_03444692.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. TW14588], ... gi\|209158701, gi... - gi\|209397301\|ref\|YP_002270883.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4115], ... gi\|208724815, gi... - gi\|208810299\|ref\|ZP_03252175.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4206], g... gi\|195937494 - gi\|195937494\|ref\|ZP_03082876.1\| Slp family outer membrane lipoprotein [Escherichia coli O157:H7 str.... gi\|208740643, gi... - gi\|208820520\|ref\|ZP_03260840.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4042], g... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai], ... gi\|208816570, gi... - gi\|208816570\|ref\|ZP_03257690.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4045], g... gi\|168782238, gi... - gi\|189000260\|gb\|EDU69246.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187769462, gi... - gi\|187769462\|gb\|EDU33306.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189376753, gi... - gi\|189376753\|gb\|EDU95169.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|168788219, gi... - gi\|189371973\|gb\|EDU90389.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189355004, gi... - gi\|189355004\|gb\|EDU73423.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|188016282, gi... - gi\|188016282\|gb\|EDU54404.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|209768020, gi... - pir\|\|G85791 probable outer membrane protein Z2849 [imported] - Escherichia coli (strain O157:H7, sub... gi\|168770779, gi... - gi\|189360405\|gb\|EDU78824.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|189365726, gi... - gi\|189365726\|gb\|EDU84142.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|15802219, gi\|... - gi\|15802219\|ref\|NP_288242.1\| putative outer membrane protein [Escherichia coli O157:H7 EDL933], gi\|1... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7], gi\|13361982... gi\|254592828, gi... - gi\|254793428\|ref\|YP_003078265.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	240.0	[0..8]	[184..11]
gi\|25305968, gi\|... - gi\|25305968\|pir\|\|AD0725 probable lipoprotein STY1949 [imported] - Salmonella enterica subsp. enteric... gi\|224583690, gi... - gi\|224583690\|ref\|YP_002637488.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|16760709 - gi\|16760709\|ref\|NP_456326.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16420351, gi\|... - gi\|16765160\|ref\|NP_460775.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164203... gi\|29141533, gi\|... - gi\|29141533\|ref\|NP_804875.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... lcl\|NC_016856.1_... - [gene=slp] [protein=putative outer membrane protein] [protein_id=YP_005237760.1] [location=complemen... gi\|62180383, gi\|... - gi\|62180383\|ref\|YP_216800.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|56413262, gi\|... - gi\|56413262\|ref\|YP_150337.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|205322087, gi... - gi\|205322087\|gb\|EDZ09926.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|161613671, gi... - gi\|161613671\|ref\|YP_001587636.1\| hypothetical protein SPAB_01395 [Salmonella enterica subsp. enteric... gi\|238912116 - gi\|238912116\|ref\|ZP_04655953.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|207856674, gi... - gi\|207856674\|ref\|YP_002243325.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|199602048, gi... - gi\|200389603\|ref\|ZP_03216214.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197940676, gi... - gi\|198246160\|ref\|YP_002215321.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|197093665, gi... - gi\|197362188\|ref\|YP_002141825.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|213855075 - gi\|213855075\|ref\|ZP_03383315.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213648048 - gi\|213648048\|ref\|ZP_03378101.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213618907 - gi\|213618907\|ref\|ZP_03372733.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213426607 - gi\|213426607\|ref\|ZP_03359357.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|205342716, gi... - gi\|205342716\|gb\|EDZ29480.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168259943, gi... - gi\|205351087\|gb\|EDZ37718.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168241412, gi... - gi\|205339388\|gb\|EDZ26152.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|205328682, gi... - gi\|205328682\|gb\|EDZ15446.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|197264193, gi... - gi\|197264193\|ref\|ZP_03164267.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197214965, gi... - gi\|197251262\|ref\|YP_002146204.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194410092, gi... - gi\|194451788\|ref\|YP_002045866.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194446640, gi... - gi\|194446640\|ref\|YP_002041076.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser...	240.0	[0..1]	[184..1]
gi\|187429953, gi... - gi\|75177265\|ref\|ZP_00697354.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Shigella bo...	238.0	[0..8]	[184..11]
gi\|36785479, gi\|... - gi\|37526049\|ref\|NP_929393.1\| hypothetical protein plu2133 [Photorhabdus luminescens subsp. laumondii...	229.0	[0..3]	[185..8]
gi\|37679235, gi\|... - gi\|37679235\|ref\|NP_933844.1\| starvation-inducible outer membrane lipoprotein [Vibrio vulnificus YJ01...	227.0	[0..1]	[168..1]
gi\|110641923, gi... - gi\|110641923\|ref\|YP_669653.1\| Slp family outer membrane lipoprotein [Escherichia coli 536], gi\|11034... gi\|75241325, gi\|... - gi\|75241325\|ref\|ZP_00725176.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|218699626, gi... - gi\|218699626\|ref\|YP_002407255.1\| putative outer membrane-associated lipoprotein [Escherichia coli IA...	227.0	[0..8]	[166..11]
gi\|153823319, gi... - gi\|153823319\|ref\|ZP_01975986.1\| outer membrane lipoprotein Slp, putative [Vibrio cholerae B33], gi\|1... gi\|15641989, gi\|... - gi\|9656528\|gb\|AAF95135.1\| outer membrane lipoprotein Slp, putative [Vibrio cholerae O1 biovar El Tor... gi\|254849073, gi... - gi\|254849073\|ref\|ZP_05238423.1\| outer membrane lipoprotein Slp [Vibrio cholerae MO10], gi\|254844778\|... gi\|11355952 - pir\|\|B82133 probable outer membrane lipoprotein Slp VC1987 [imported] - Vibrio cholerae (strain N169... gi\|227082114, gi... - gi\|227082114\|ref\|YP_002810665.1\| putative outer membrane lipoprotein Slp [Vibrio cholerae M66-2], gi...	227.0	[0..1]	[167..18]
gi\|27359737, gi\|... - gi\|27363621\|ref\|NP_759149.1\| starvation-inducible outer membrane lipoprotein [Vibrio vulnificus CMCP...	226.0	[0..1]	[168..1]
gi\|75227932, gi\|... - gi\|75227932\|ref\|ZP_00714632.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|209912430, gi... - gi\|209919171\|ref\|YP_002293255.1\| hypothetical protein ECSE_1980 [Escherichia coli SE11], gi\|20991243...	226.0	[0..8]	[166..11]
gi\|110616891, gi... - gi\|110807343\|ref\|YP_690863.1\| outer membrane protein induced after carbon starvation [Shigella flexn... gi\|24114779, gi\|... - ref\|NP_709289.1\| outer membrane protein induced after carbon starvation [Shigella flexneri 2a str. 3...	226.0	[0..1]	[181..56]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSFRLVMM VLACVVLAAC TRVLSDEARR LVDPTVTFTG LKANPDAFLG KYVMLGGVIV  60
   61 DTKNNSDGGQ IEVMQVGLDE SGIPGDTFRS EGRFLATSAQ FLDAVIFKPG RLVTLVGEIK 120
  121 GKKVQPLDEV NYSYPVVAIK EIHVWKSQDY DSGYPYPTPA PYYYYDPYWY GVWPGPYWHR 180
  181 PLGPVYRRW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.957
Match:	2f2fA
Description:	No description for 2f2fA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.202987767801423	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: