YRC Public Data Repository - Protein Structure Prediction

Protein:	PDXJ_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXJ_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|91227849, gi\|... - gi\|91227849\|ref\|ZP_01262022.1\| pyridoxal phosphate biosynthetic protein [Vibrio alginolyticus 12G01]...	405.0	[0..4]	[239..6]
gi\|116183578, gi... - gi\|75854067\|ref\|ZP_00761787.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Vibrio sp. Ex25], ...	403.0	[0..4]	[239..6]
gi\|227835950, gi... - gi\|227887600\|ref\|ZP_04005405.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli 8397... gi\|26248929, gi\|... - gi\|26248929\|ref\|NP_754969.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli CFT073]...	401.0	[0..4]	[239..11]
PDXJ_ECOL6 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O6 GN=pdxJ PE=3 SV=3 PDXJ_ECOL6 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=p...	401.0	[0..4]	[239..6]
gi\|226901440, gi... - gi\|237705074\|ref\|ZP_04535555.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia sp. 3_2_5... gi\|115513909, gi... - gi\|117624785\|ref\|YP_853698.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli APEC O... gi\|75237417 - gi\|75237417\|ref\|ZP_00721452.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli F... gi\|91211890, gi\|... - gi\|91211890\|ref\|YP_541876.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli UTI89],...	401.0	[0..4]	[239..11]
gi\|110642726, gi... - gi\|110642726\|ref\|YP_670456.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 536], gi\|110344318\|... gi\|190905698, gi... - gi\|191174007\|ref\|ZP_03035524.1\| pyridoxine 5'-phosphate synthase [Escherichia coli F11], gi\|19090569... gi\|218559485, gi... - gi\|218559485\|ref\|YP_002392398.1\| pyridoxine 5'-phosphate synthase [Escherichia coli S88], gi\|2183662... gi\|218428244, gi... - gi\|218690680\|ref\|YP_002398892.1\| pyridoxine 5'-phosphate synthase [Escherichia coli ED1a], gi\|218428...	401.0	[0..4]	[239..6]
gi\|75513174 - gi\|75513174\|ref\|ZP_00735616.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli 5... gi\|75257988 - gi\|75257988\|ref\|ZP_00729462.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|75237690 - gi\|75237690\|ref\|ZP_00721706.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|75228861 - gi\|75228861\|ref\|ZP_00715462.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli B... gi\|75209488 - gi\|75209488\|ref\|ZP_00709713.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli B... gi\|83586784 - gi\|83586784\|ref\|ZP_00925415.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli 1...	401.0	[0..4]	[239..11]
gi\|189368383, gi... - gi\|189368383\|gb\|EDU86799.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4501],... gi\|189355300, gi... - gi\|189355300\|gb\|EDU73719.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4401],... gi\|168773510, gi... - gi\|187770734\|gb\|EDU34578.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4196],... gi\|168768668, gi... - gi\|189362219\|gb\|EDU80638.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4486],... gi\|189372245, gi... - gi\|189372245\|gb\|EDU90661.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC869], ... gi\|168778541, gi... - gi\|189003261\|gb\|EDU72247.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4076],... gi\|170019153, gi... - gi\|170019153\|ref\|YP_001724107.1\| pyridoxine 5'-phosphate synthase [Escherichia coli ATCC 8739], gi\|1... gi\|189378686, gi... - gi\|189378686\|gb\|EDU97102.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC508], ... PDXJ_ECOLI - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) (PNP synthase) - Escherichia coli PDXJ_ECO57 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O157:H7 GN=pdxJ PE=3 SV=2 EG10693 - pyridoxine 5'-phosphate synthase / Pyridoxine 5'-phosphate (PNP) synthase; homo-octamer gi\|168748366, gi... - gi\|188017072\|gb\|EDU55194.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4113],... gi\|208814486, gi... - gi\|208814486\|ref\|ZP_03255815.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC40... gi\|208728720, gi... - gi\|208808919\|ref\|ZP_03251256.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC42... gi\|209157627, gi... - gi\|209396227\|ref\|YP_002272039.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4... gi\|208739464, gi... - gi\|208819341\|ref\|ZP_03259661.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC40... gi\|15832684, gi\|... - gi\|15832684\|ref\|NP_311457.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. Sakai],... gi\|217326667, gi... - gi\|217326667\|ref\|ZP_03442750.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. TW14... gi\|89109370, gi\|... - gi\|89109370\|ref\|AP_003150.1\| pyridoxine 5'-phosphate synthase [Escherichia coli str. K-12 substr. W3... gi\|209920043, gi... - gi\|209920043\|ref\|YP_002294127.1\| pyridoxine 5'-phosphate synthase [Escherichia coli SE11], gi\|209913... gi\|157067723, gi... - gi\|75196582\|ref\|ZP_00706652.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli H... gi\|218361913, gi... - gi\|218555145\|ref\|YP_002388058.1\| pyridoxine 5'-phosphate synthase [Escherichia coli IAI1], gi\|218361... gi\|75187317, gi\|... - gi\|75187317\|ref\|ZP_00700584.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|218547908, gi... - gi\|218547908\|ref\|YP_002381699.1\| pyridoxine 5'-phosphate synthase [Escherichia fergusonii ATCC 35469... gi\|188495429, gi... - gi\|188495429\|ref\|ZP_03002699.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli 5363... gi\|170082173, gi... - gi\|170082173\|ref\|YP_001731493.1\| pyridoxine 5'-phosphate synthase [Escherichia coli str. K-12 substr... gi\|193064042, gi... - gi\|193064042\|ref\|ZP_03045127.1\| pyridoxine 5'-phosphate synthase [Escherichia coli E22], gi\|19292927... EG10693 - pyridoxine 5'-phosphate synthase / Pyridoxine 5'-phosphate (PNP) synthase; homo-octamer gi\|191167992, gi... - gi\|191167992\|ref\|ZP_03029794.1\| pyridoxine 5'-phosphate synthase [Escherichia coli B7A], gi\|19090199... gi\|194429293, gi... - gi\|194429293\|ref\|ZP_03061820.1\| pyridoxine 5'-phosphate synthase [Escherichia coli B171], gi\|1944127... gi\|193068330, gi... - gi\|193068330\|ref\|ZP_03049293.1\| pyridoxine 5'-phosphate synthase [Escherichia coli E110019], gi\|1929... gi\|195936711 - gi\|195936711\|ref\|ZP_03082093.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli O157... gi\|194423419, gi... - gi\|194437613\|ref\|ZP_03069709.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 101-1], gi\|194423... gi\|124499854, gi... - gi\|124529547\|ref\|ZP_01700517.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli B], ... gi\|218696192, gi... - gi\|218696192\|ref\|YP_002403859.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 55989], gi\|21835... gi\|238863352, gi... - gi\|238901729\|ref\|YP_002927525.1\| pyridoxine 5'-phosphate synthase [Escherichia coli BW2952], gi\|2388... gi\|242378165, gi... - gi\|251785892\|ref\|YP_003000196.1\| hypothetical protein B21_02422 [Escherichia coli BL21], gi\|24237816... gi\|253978607, gi... - gi\|254289300\|ref\|YP_003055048.1\| pyridoxal phosphate biosynthetic protein [Escherichia coli BL21(DE3... gi\|254162539, gi... - gi\|254162539\|ref\|YP_003045647.1\| pyridoxal phosphate biosynthetic protein [Escherichia coli B str. R... gi\|254593914, gi... - gi\|254794514\|ref\|YP_003079351.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. TW1...	401.0	[0..4]	[239..6]
PDXJ_ECOLI - (P0A794) Pyridoxal phosphate biosynthetic protein pdxJ (PNP synthase) PDXJ_ECO57 - (P0A795) Pyridoxal phosphate biosynthetic protein pdxJ (PNP synthase)	400.0	[0..4]	[239..5]
gi\|75178159 - gi\|75178159\|ref\|ZP_00698218.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Shigella boydii BS...	400.0	[0..4]	[239..11]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLGVNIDH VATIRQARGG VEPDPVAAAA IAEFAGADGI TVHLREDRRH IQDRDLRLLR  60
   61 QTVKTKLNLE MAATDEMVGI ALSVKPDMCT LVPERRQELT TEGGLDVRVG MQALADAIGR 120
  121 LQDGGIVVSL FIDPDADQVK ASSKVGADYI EIHTGTFAEA REWKKEQAEL ERIENAIKLG 180
  181 TKLGLGINAG HGLNYTNVRK VAALGGIEEF NIGHSIISRA VFTGLDRAVR DMVDLVKYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1m5wA
Description:	Pyridoxine 5'-phosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.52383794192252	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: