YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996896, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996896, gi|....

Description	E-value	Query Range	Subject Range
gi\|89892399 - gi\|89892399\|gb\|ABD78984.1\| HI0568-like protein [Haemophilus influenzae]	189.0	[0..5]	[188..365]
gi\|53733090 - gi\|53733090\|ref\|ZP_00155560.2\| COG2183: Transcriptional accessory protein [Haemophilus influenzae R2...	189.0	[0..5]	[188..367]
gi\|68249168, gi\|... - gi\|68249168\|ref\|YP_248280.1\| transcriptional accessory protein [Haemophilus influenzae 86-028NP], gi...	188.0	[0..5]	[188..365]
gi\|53733333 - gi\|53733333\|ref\|ZP_00156386.2\| COG2183: Transcriptional accessory protein [Haemophilus influenzae R2... gi\|145272118, gi... - gi\|145638523\|ref\|ZP_01794132.1\| transcription elongation factor GreB [Haemophilus influenzae PittII]...	188.0	[0..5]	[188..365]
YHGF_HAEIN, Y568... - (P71353) Hypothetical protein HI0568, Uncharacterized protein HI_0568 OS=Haemophilus influenzae GN=H... Y568_HAEIN - Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	188.0	[0..5]	[188..365]
gi\|188521051, gi... - gi\|188576599\|ref\|YP_001913528.1\| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae PXO99A... gi\|84367688, gi\|... - gi\|84623748\|ref\|YP_451120.1\| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF 31101... gi\|58581848, gi\|... - gi\|58581848\|ref\|YP_200864.1\| transcription-related protein [Xanthomonas oryzae pv. oryzae KACC10331]...	187.0	[0..2]	[188..366]
gi\|15603313, gi\|... - gi\|15603313\|ref\|NP_246387.1\| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida str...	186.0	[0..7]	[188..386]
gi\|32035056 - gi\|32035056\|ref\|ZP_00135122.1\| COG2183: Transcriptional accessory protein [Actinobacillus pleuropneu...	185.0	[0..4]	[188..366]
gi\|27364308, gi\|... - gi\|27364308\|ref\|NP_759836.1\| transcriptional accessory protein [Vibrio vulnificus CMCP6], gi\|2736042...	185.0	[0..7]	[188..368]
gi\|21242797, gi\|... - gi\|21242797\|ref\|NP_642379.1\| transcription-related protein [Xanthomonas axonopodis pv. citri str. 30...	185.0	[0..2]	[188..366]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRTGHAVY LTLALAVMTL PLLFKGHGTS PLEIPAVAFV RSRSDDRPVS IMITGVPEKS  60
   61 GVYRVARGST CQSVINMALP NSSVNYLPPA TVGRILCDGD VVIVRNKNRA TSDVSLGKLA 120
  121 VSQLMLMRIP LDPNRMDIKD WELLPGIGPE LARRIVCDRQ DNGDFSSFEA LERVPGIGPK 180
  181 TLMSLKEFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2oceA
Description:	No description for 2oceA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.856350259346543	bayes_pls_golite062009
hydrolase activity	0.341214937126353	bayes_pls_golite062009
nuclease activity	0.332292699051863	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.262762849499971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: