YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996864, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996864, gi|....

Description	E-value	Query Range	Subject Range
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	338.0	[0..2]	[297..72]
gi\|46241274 - gi\|46241274\|gb\|AAS82860.1\| geranyl diphosphate synthase large subunit [Antirrhinum majus]	333.0	[0..1]	[297..79]
gi\|6277254 - gi\|6277254\|dbj\|BAA86284.1\| geranylgeranyl pyrophosphate synthase [Croton sublyratus]	333.0	[0..2]	[297..76]
gi\|58201026 - gi\|58201026\|gb\|AAW66658.1\| geranyl diphosphate synthase [Picrorhiza kurrooa]	332.0	[0..2]	[297..79]
gi\|56122554 - gi\|56122554\|gb\|AAV74395.1\| geranylgeranyl diphosphate synthase [Adonis aestivalis var. palaestina]	330.0	[0..2]	[297..72]
gi\|92868507, gi\|... - gi\|92871726\|gb\|ABE80654.1\| Polyprenyl synthetase [Medicago truncatula], gi\|92868507\|gb\|ABE78512.1\| P...	329.0	[0..2]	[297..80]
GGPP1_ARATH - Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis th...	329.0	[0..2]	[297..75]
gi\|34484306 - gi\|34484306\|gb\|AAQ72786.1\| geranylgeranyl diphosphate synthase [Ginkgo biloba]	329.0	[0..2]	[297..98]
gi\|17352451 - gi\|17352451\|gb\|AAL17614.2\|AF425235_1 geranylgeranyl diphosphate synthase [Abies grandis]	328.0	[0..2]	[297..90]
GGPPS_HEVBR - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1	328.0	[0..2]	[297..78]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKGYLKER CALVDEALER HLPAEDELPS SVHRAMRYSV FAGGKRVRPI LMLAACDAVG  60
   61 GDTALALPAA CAMEMIHTYS LIHDDLPAMD DDDFRRGRPT NHKVFGEAIA ILAGDALLTE 120
  121 AFILISSPSY AAAVGSDRLL PVIHEIALCA GSRGMVGGQV VDMESEGNKE IDLATVQYIH 180
  181 TRKTGALIKA SIKAGAVLGG ANADAVKAVT RYGEAIGLAF QIADDILDIE GTTEQIGKDA 240
  241 GSDEARGKAT YPAVLGLAES KRRAQELLDL AIEALSPFDH RADPLREIAR YIVSRKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.69897
Match:	2j1pA
Description:	No description for 2j1pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits