YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996837, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996837, gi|....

Description	E-value	Query Range	Subject Range
gi\|67875716, gi\|... - gi\|67875716\|ref\|ZP_00504932.1\| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding domain:...	190.0	[0..3]	[191..413]
gi\|78223033, gi\|... - gi\|78223033\|ref\|YP_384780.1\| indolepyruvate oxidoreductase subunit B [Geobacter metallireducens GS-1...	188.0	[0..1]	[192..1]
gi\|20806954 - gi\|20806954\|ref\|NP_622125.1\| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi... gi\|20515433, gi\|... - gi\|20806954\|ref\|NP_622125.1\| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi...	184.0	[0..3]	[189..414]
gi\|242229946, gi... - gi\|242258533\|ref\|ZP_04803322.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo... gi\|114805431, gi... - gi\|167039047\|ref\|YP_001662032.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro...	183.0	[0..3]	[189..414]
gi\|241882973, gi... - gi\|241904660\|ref\|ZP_04789336.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo... gi\|166857070, gi... - gi\|76796659\|ref\|ZP_00779015.1\| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermoanaerobacter e...	183.0	[0..3]	[189..414]
gi\|38489084 - gi\|38489084\|gb\|AAR21231.1\| indolepyruvate oxidoreductase II beta subunit [Methanococcus voltae] gi\|38489084\|gb\|A... - indolepyruvate oxidoreductase II beta subunit [Methanococcus voltae]	183.0	[0..7]	[192..2]
gi\|4972238 - gi\|4972238\|emb\|CAB43933.1\| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]	182.0	[0..3]	[189..414]
gi\|18976906, gi\|... - gi\|18976906\|ref\|NP_578263.1\| indolepyruvate oxidoreductase subunit B [Pyrococcus furiosus DSM 3638],...	181.0	[0..1]	[189..1]
gi\|25284484 - pir\|\|B97208 pyruvate ferredoxin oxidoreductase CAC2499 [imported] - Clostridium acetobutylicum gi\|15025520, gi\|... - gi\|15895764\|ref\|NP_349113.1\| pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824...	181.0	[0..3]	[189..414]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTITNILL VGVGGQGILL ASEILSEAFM LAGFDVKKSE IHGMSQRGGS VVSHVRYGKE  60
   61 VHSPIVPEGE GDILFGFELM ETYRYLPLLR KGGTVVANDL RISPPSVLLG QASYPDDLPD 120
  121 RIRALFPDFL LVDGQHLAAE AGNVRAANTV LLGAVAKQLD IPDECWHKAL ERMVPPKALD 180
  181 VNRKAFQLGR AL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits