YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996832, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996832, gi|....

Description	E-value	Query Range	Subject Range
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	196.0	[0..5]	[280..555]
gi\|106881932, gi... - gi\|119946608\|ref\|YP_944288.1\| ABC transporter inner-membrane translocator [Psychromonas ingrahamii 3...	185.0	[0..4]	[292..252]
gi\|25520371 - pir\|\|E97649 probable permease of ABC transporter (PA4859) [imported] - Agrobacterium tumefaciens (st... gi\|15157590, gi\|... - gi\|15889684\|ref\|NP_355365.1\| hypothetical protein AGR_C_4379 [Agrobacterium tumefaciens str. C58], g...	182.0	[0..24]	[291..337]
gi\|90414544, gi\|... - gi\|90414544\|ref\|ZP_01222518.1\| putative urea short-chain amide or branched-chain amino acid uptake A...	177.0	[0..7]	[291..250]
gi\|84387635, gi\|... - gi\|84387635\|ref\|ZP_00990652.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	177.0	[0..11]	[291..250]
gi\|196111480, gi... - gi\|88793947\|ref\|ZP_01109659.1\| Branched-chain amino acid ABC-type transport system, permease compone...	177.0	[0..7]	[292..246]
gi\|86164365, gi\|... - gi\|87120262\|ref\|ZP_01076157.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	176.0	[0..7]	[291..266]
gi\|110637661, gi... - gi\|110637661\|ref\|YP_677868.1\| branched-chain amino acid ABC transporter, permease component [Cytopha... gi\|48855151 - gi\|48855151\|ref\|ZP_00309311.1\| COG0559: Branched-chain amino acid ABC-type transport system, permeas...	175.0	[0..8]	[291..253]
gi\|110835371, gi... - gi\|110835371\|ref\|YP_694230.1\| branched-chain amino acid ABC transporter, permease protein [Alcanivor...	174.0	[0..24]	[291..282]
gi\|94426200, gi\|... - gi\|94501624\|ref\|ZP_01308140.1\| Branched-chain amino acid ABC-type transport system, permease compone...	174.0	[0..26]	[291..267]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGQQIAQY LLSGLSTGAI YSLIGVGFAI IHNATGIINF AQGELVMLGG MFTLFFLTAL  60
   61 NLPLLVAIIL AIGATTLVGV VFERLAIRPM KNAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PISLVIITIG GSILIRGIAM IVWGKDTHAI PTFSGNEPIH LGEATILPQH LWIFAVTIVV  60
   61 MICSKLYFNY TISGKAMRAC AYNRRAAGLV GIDVRRMVLF SFAISSAMGS LAGIIIAPLT 120
  121 MTSYDVGIML GLKGFCAAII GGMSSGLGTI LGGILLGILE SLGAGLFSSG YKDAIAFIIL 180
  181 LLILFVRPQG LFRKGETERV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits