YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996735, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996735, gi|....

Description	E-value	Query Range	Subject Range
gi\|27883937 - gi\|27883937\|gb\|AAO23951.1\| phosphoribosylformylglycinamidine synthase [Glycine max]	247.0	[0..3]	[270..1043]
gi\|115441519, gi... - gi\|115441519\|ref\|NP_001045039.1\| Os01g0888500 [Oryza sativa (japonica cultivar-group)], gi\|113534570...	245.0	[0..2]	[271..522]
PUR4_ARATH - Probable phosphoribosylformylglycinamidine synthase, chloroplastic OS=Arabidopsis thaliana GN=At1g74...	244.0	[0..1]	[272..1114]
gi\|71037752, gi\|... - gi\|71064767\|ref\|YP_263494.1\| phosphoribosylformylglycinamidine synthase [Psychrobacter arcticus 273-...	243.0	[0..2]	[271..1086]
gi\|94425966, gi\|... - gi\|94501913\|ref\|ZP_01308423.1\| phosphoribosylformylglycinamidine synthase [Oceanobacter sp. RED65], ...	243.0	[0..3]	[270..1039]
PUR4_SHIDS - Phosphoribosylformylglycinamidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=purL...	243.0	[0..2]	[268..1038]
gi\|12516970, gi\|... - gi\|15803082\|ref\|NP_289113.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7 ED... gi\|25293858 - gi\|25293858\|pir\|\|C85901 hypothetical protein purL [imported] - Escherichia coli (strain O157:H7, su...	243.0	[0..2]	[268..1038]
gi\|157067714, gi... - gi\|75196575\|ref\|ZP_00706645.1\| COG0046: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetas...	243.0	[0..2]	[268..1038]
gi\|217319728, gi... - gi\|217327361\|ref\|ZP_03443444.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|208805865, gi... - gi\|208805865\|ref\|ZP_03248202.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|208814009, gi... - gi\|208814009\|ref\|ZP_03255338.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|208819723, gi... - gi\|208819723\|ref\|ZP_03260043.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|209398316, gi... - gi\|209398316\|ref\|YP_002272031.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H... gi\|189402491, gi... - gi\|189402491\|ref\|ZP_02782792.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|189403144, gi... - gi\|189403144\|ref\|ZP_02793665.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|189368436, gi... - gi\|189403949\|ref\|ZP_02786182.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|195936704 - gi\|195936704\|ref\|ZP_03082086.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|189378675, gi... - gi\|189378675\|gb\|EDU97091.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7 str... gi\|254593906, gi... - gi\|254794506\|ref\|YP_003079343.1\| phosphoribosylformyl-glycineamide synthetase [Escherichia coli O157... gi\|187775825, gi... - gi\|187775825\|ref\|ZP_02798527.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|188024726, gi... - gi\|188024726\|ref\|ZP_02773398.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|189009973, gi... - gi\|189009973\|ref\|ZP_02803538.2\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7... gi\|168787914, gi... - gi\|189372281\|gb\|EDU90697.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7 str... PUR4_ECO57 - Phosphoribosylformylglycinamidine synthase OS=Escherichia coli O157:H7 GN=purL PE=3 SV=3 gi\|25293856, gi\|... - pir\|\|G91056 phosphoribosylformyl-glycineamide synthetase [imported] - Escherichia coli (strain O157:... gi\|13362894, gi\|... - gi\|15832677\|ref\|NP_311450.1\| phosphoribosylformylglycinamidine synthase [Escherichia coli O157:H7 st...	243.0	[0..2]	[268..1038]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKARAIVIT GNGTNCEMEA AHACRLGGFD ETVIAHISDI LTGEIRLDDF HFLNLTGGFL  60
   61 DGDDLGSAKA QANRFRYARV DDLEEHLIDQ IIRFIDAGKL ILGVCNGFQL MTKMGLLPAV 120
  121 DGAYLAQTAT LTFNACGRFQ DRWVYLKVDQ ASPSIYTKGV ETGLYLPIRH GEGKFVVDSP 180
  181 ATLAAIEAKH LAVFTYSDET YSAPTMEFPL NPNGSVNAIA AVCNESGRLM GMMPHPEAFL 240
  241 HRTNHPRWTR EDLPEEGDGL VLFRNAADYA KANLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1t3tA
Description:	Structure of Formylglycinamide synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.1043669360156	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.56186360117064	bayes_pls_golite062009
phosphoribosylformylglycinamidine synthase activity	2.11687258439612	bayes_pls_golite062009
catalytic activity	1.67435536171189	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	0.93238515268938	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	0.91202213061505	bayes_pls_golite062009
ligase activity	0.47575409275683	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: