YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983607, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983607, gi|....

Description	E-value	Query Range	Subject Range
gi\|56420550, gi\|... - gi\|56420550\|ref\|YP_147868.1\| transcriptional regulator [Geobacillus kaustophilus HTA426], gi\|5638039...	172.0	[0..1]	[233..12]
gi\|134300031, gi... - gi\|88945080\|ref\|ZP_01148300.1\| regulatory protein GntR, HTH [Desulfotomaculum reducens MI-1], gi\|889...	169.0	[0..1]	[237..1]
gi\|89334469, gi\|... - gi\|89895021\|ref\|YP_518508.1\| hypothetical protein DSY2275 [Desulfitobacterium hafniense Y51], gi\|893...	166.0	[0..1]	[237..5]
gi\|219669424, gi... - gi\|219669424\|ref\|YP_002459859.1\| GntR domain protein [Desulfitobacterium hafniense DCB-2], gi\|219539...	165.0	[0..1]	[237..1]
gi\|147678568, gi... - gi\|98662020\|dbj\|GAA01035.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476785...	165.0	[0..1]	[230..12]
gi\|150391479, gi... - gi\|77686091\|ref\|ZP_00801461.1\| regulatory protein GntR, HTH:GntR, C-terminal [Alkaliphilus metallire...	164.0	[0..3]	[231..2]
gi\|52081972, gi\|... - gi\|52787360\|ref\|YP_093189.1\| YvfI [Bacillus licheniformis ATCC 14580], gi\|52349862\|gb\|AAU42496.1\| Yv...	164.0	[0..1]	[240..1]
gi\|71839903, gi\|... - gi\|71839903\|ref\|ZP_00679641.1\| regulatory protein, GntR:Bacterial regulatory protein, ArsR [Pelobact...	164.0	[0..1]	[240..1]
gi\|23097824, gi\|... - gi\|23097824\|ref\|NP_691290.1\| transcriptional regulator [Oceanobacillus iheyensis HTE831], gi\|2277604...	162.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFKPIKPKK ISTQIAEQIR SSILAGEFTP GEKLPPEREL AEMFGVSRPS VREALNILAA  60
   61 AGLVESYQGG GTIVKSLMDA ASGPPLSEII KVEQERALDV IEVRKCMEAW TAYYAAQRAL 120
  121 PDDVRKLEGI VWNMEANLNG LKPSEDLDAN FHIVIARSTH NVVWLHLMQT IFEAMKEFQR 180
  181 SVWRAVYLTE EDHRTLFAHH KAIFEAIRDK DCERARNAML GHLTFAEKRS SIYVNQSRQD 240
  241 R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits