YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996683, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996683, gi|....

Description	E-value	Query Range	Subject Range
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	172.0	[0..3]	[238..2]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	171.0	[0..3]	[238..2]
gi\|254479401, gi... - gi\|254479401\|ref\|ZP_05092734.1\| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carb... gi\|20517799, gi\|... - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong... gi\|20809120 - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong...	166.0	[0..4]	[238..3]
gi\|39577437, gi\|... - gi\|42525226\|ref\|NP_970606.1\| partition protein, ParA-like protein [Bdellovibrio bacteriovorus HD100]...	166.0	[0..3]	[238..18]
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	166.0	[0..1]	[238..1]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	164.0	[0..3]	[238..2]
gi\|34496118, gi\|... - gi\|34496118\|ref\|NP_900333.1\| ParA family chromosome partitioning ATPase [Chromobacterium violaceum A...	164.0	[0..1]	[238..1]
gi\|242256462, gi... - gi\|242256462\|ref\|ZP_04801353.1\| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X513], gi... gi\|114805264, gi... - gi\|167041014\|ref\|YP_001663999.1\| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514], ...	163.0	[0..4]	[239..3]
gi\|23002958, gi\|... - gi\|23002958\|ref\|ZP_00046629.1\| hypothetical protein Lgas_03000964 [Lactobacillus gasseri ATCC 33323]... gi\|226819453 - gi\|226819453\|ref\|ZP_03808572.1\| chromosome partitioning ATPase [Lactobacillus gasseri MV-22] gi\|23002958 - gi\|23002958\|ref\|ZP_00046629.1\| COG1192: ATPases involved in chromosome partitioning [Lactobacillus g...	163.0	[0..4]	[238..3]
gi\|49235569, gi\|... - gi\|83591332\|ref\|YP_431341.1\| chromosome segregation ATPase [Moorella thermoacetica ATCC 39073], gi\|8...	163.0	[0..4]	[238..3]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKGIFITG TDTGVGKTIV AATIARLLRD RGVNVGVMKP VTSGCIERDG TLISEDAELL  60
   61 TWAAGVPLDE ACAPYRLRTP IAPSVAASRE GVKIDFNHLK DAYETLRQRH DFVIVEGAGG 120
  121 LMVPLSGGML VADLMSLLKL SLLVVARPNL GTINHTVLTC YAARQLGLDV RGVIVNSYPE 180
  181 SPDMAEEYAP HLIDSLSGAP LLGVFPRIEG AEGRAMVEQL AARLATEPTT RILVREIGCA 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1a82A
Description:	DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: