YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996677, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996677, gi|....

Description	E-value	Query Range	Subject Range
gi\|67153890, gi\|... - gi\|67153890\|ref\|ZP_00415635.1\| ATP:corrinoid adenosyltransferase BtuR/CobO/CobP:TonB-dependent vitam...	201.0	[0..3]	[175..874]
gi\|36785775, gi\|... - gi\|37526344\|ref\|NP_929688.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Photorhabdus lumines...	189.0	[0..2]	[175..27]
cobO, cobA, btuR - cobO, cobA, btuR putative cob(I)alamin adenosyltransferase 790503:791129 forward MW:23315	188.0	[0..1]	[175..32]
gi\|114707115, gi... - gi\|114707115\|ref\|ZP_01440013.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Fulvimarina pelag...	188.0	[0..4]	[175..41]
gi\|91975115, gi\|... - gi\|91975115\|ref\|YP_567774.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Rhodopseudomonas pal...	187.0	[0..1]	[175..32]
gi\|75179086 - gi\|75179086\|ref\|ZP_00699104.1\| COG2109: ATP:corrinoid adenosyltransferase [Shigella boydii BS512]	186.0	[0..2]	[175..8]
gi\|46197922, gi\|... - gi\|46255073\|ref\|YP_005985.1\| cob(I)alamin adenosyltransferase [Thermus thermophilus HB27], gi\|461979...	186.0	[0..3]	[175..16]
gi\|81245687, gi\|... - gi\|82544276\|ref\|YP_408223.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella boydii Sb22...	186.0	[0..2]	[175..8]
gi\|83369155, gi\|... - gi\|83369155\|ref\|ZP_00914013.1\| ATP:corrinoid adenosyltransferase BtuR/CobO/CobP [Rhodobacter sphaero...	186.0	[0..3]	[175..364]
gi\|23502181, gi\|... - gi\|23502181\|ref\|NP_698308.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Brucella suis 1330],... gi\|82700131 - gi\|82700131\|ref\|YP_414705.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Brucella melitensis ... gi\|82616232 - gi\|82616232\|emb\|CAJ11281.1\| ATP:corrinoid adenosyltransferase BtuR/CobO/CobP [Brucella melitensis bi... gi\|148560674, gi... - gi\|148560674\|ref\|YP_001259218.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Brucella ovis AT...	185.0	[0..3]	[175..30]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDQGCIQV YTGNGKGKTT AALGLAFRAA GRGFQVLVIQ FMKGGGPYGE HEAAKRLAPE  60
   61 LTIIATGRPG WVNRENPDPE DVRLAREALN MAREALTREH YDLVILDEIN GAVSFGLIPV 120
  121 DDVLELMTLK PPRVELVLTG RNADERVIAA ADLVTEMREI KHYYRAGVPA RTGIEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1g5rA
Description:	ATP:corrinoid adenosyltransferase CobA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: