YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996662, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996662, gi|....

Description	E-value	Query Range	Subject Range
gi\|78700337, gi\|... - gi\|78700337\|ref\|ZP_00864794.1\| Protein of unknown function DUF77 [Alkalilimnicola ehrlichei MLHE-1],...	140.0	[0..1]	[99..1]
gi\|7450728 - pir\|\|S74554 hypothetical protein sll0230 - Synechocystis sp. (strain PCC 6803) Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0230 PE=3 SV=1 Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0230 PE=3 SV...	139.0	[0..1]	[95..21]
gi\|32470856, gi\|... - gi\|32470856\|ref\|NP_863849.1\| hypothetical protein RB339 [Rhodopirellula baltica SH 1], gi\|32443001\|e...	137.0	[0..1]	[97..1]
gi\|116071043, gi... - gi\|116071043\|ref\|ZP_01468312.1\| hypothetical protein BL107_15395 [Synechococcus sp. BL107], gi\|11606...	134.0	[0..1]	[98..1]
gi\|89083722, gi\|... - gi\|89091987\|ref\|ZP_01164942.1\| hypothetical protein MED92_07466 [Oceanospirillum sp. MED92], gi\|8908...	134.0	[0..1]	[98..1]
gi\|78184310, gi\|... - gi\|78184310\|ref\|YP_376745.1\| hypothetical protein Syncc9902_0733 [Synechococcus sp. CC9902], gi\|7816...	133.0	[0..1]	[98..1]
gi\|91797642, gi\|... - gi\|92114552\|ref\|YP_574480.1\| hypothetical protein Csal_2434 [Chromohalobacter salexigens DSM 3043], ...	133.0	[0..1]	[99..1]
gi\|78213450, gi\|... - gi\|78213450\|ref\|YP_382229.1\| hypothetical protein Syncc9605_1933 [Synechococcus sp. CC9605], gi\|7819...	132.0	[0..1]	[99..1]
gi\|116073086, gi... - gi\|116073086\|ref\|ZP_01470348.1\| hypothetical protein RS9916_31587 [Synechococcus sp. RS9916], gi\|116...	132.0	[0..1]	[95..1]
gi\|25489859 - pir\|\|E83829 hypothetical protein BH1437 [imported] - Bacillus halodurans (strain C-125) gi\|10174054, gi\|... - gi\|15614000\|ref\|NP_242303.1\| hypothetical protein BH1437 [Bacillus halodurans C-125], gi\|10174054\|db...	129.0	[0..4]	[98..254]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVMVDLCIV PIGVGVSLSP YVAACQKVLD EAGLKTSLHS YGTNIEGEWD AVFAAVRRCH  60
   61 EVVHGMGAPR ITTTIKLGTR TDRVQTMEDK VRSVQEKMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1lxnA
Description:	Hypothetical protein MTH1187
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits