YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983483, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983483, gi|....

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	189.0	[0..1]	[279..972]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	172.0	[0..6]	[282..84]
gi\|50746583 - gi\|50746583\|ref\|XP_420564.1\| PREDICTED: similar to hypothetical protein CL640 [Gallus gallus]	172.0	[0..2]	[283..74]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	171.0	[0..6]	[282..78]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	171.0	[0..7]	[283..118]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	170.0	[0..2]	[282..68]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	170.0	[0..2]	[283..118]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	168.0	[0..5]	[244..632]
gi\|52138578, gi\|... - gi\|52138578\|ref\|NP_056512.3\| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Homo sapiens...	168.0	[0..2]	[283..118]
COQ2_RAT - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1	167.0	[0..2]	[283..68]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSFQAFLR ICRPLQWLKN LMLFFPPFLS GTIFTPEVAV KGIPAFSAFC LASSAGYILN  60
   61 DIMDSEQDRL HPTKRFRPLP SGVVSPAVAT ALAGFLVLAG IGVAAITQSP RFLLFLLLYL 120
  121 LVTAIYSLKV KDIPLLDVFC VATGFIIRLE AGGEAFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPISSWLFLS VFLLALFLSI GKRLTEKHNL GDGAGLHRKS LAGYPDGFLE GAMYLTGGAV  60
   61 LVTYSMYTLS RSHLFYTVPL CCFGLLRYIL RVKSGQSGDP TESLLKDIPL LLVSLAWAAI 120
  121 IGWRLYF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits