YRC Public Data Repository - Protein Structure Prediction

Protein:	AROE_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROE_GEOSL.

Description	E-value	Query Range	Subject Range
AROE_METKA - Shikimate dehydrogenase OS=Methanopyrus kandleri GN=aroE PE=3 SV=1 AROE_METKA - Shikimate dehydrogenase (NADP(+)) OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC...	269.0	[0..2]	[284..6]
gi\|167037479, gi... - gi\|76797197\|ref\|ZP_00779533.1\| Quinate/Shikimate 5-dehydrogenase [Thermoanaerobacter ethanolicus ATC...	256.0	[0..1]	[282..1]
gi\|114845254, gi... - gi\|167040141\|ref\|YP_001663126.1\| shikimate 5-dehydrogenase [Thermoanaerobacter sp. X514], gi\|1668543...	255.0	[0..1]	[282..1]
AROE_ALKMQ - Shikimate dehydrogenase (NADP(+)) OS=Alkaliphilus metalliredigens (strain QYMF) GN=aroE PE=3 SV=1	254.0	[0..2]	[283..4]
AROE_THETN - Shikimate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=aroE PE=3 SV=1 AROE_CALS4 - Shikimate dehydrogenase (NADP(+)) OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM ... gi\|214034934, gi... - gi\|254479120\|ref\|ZP_05092471.1\| shikimate 5-dehydrogenase [Carboxydibrachium pacificum DSM 12653], g...	250.0	[0..1]	[284..1]
gi\|170127636, gi... - gi\|170707392\|ref\|ZP_02897846.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. A0389], gi\|170127... gi\|21402380, gi\|... - gi\|65321706\|ref\|ZP_00394665.1\| COG0169: Shikimate 5-dehydrogenase [Bacillus anthracis str. A2012], r... gi\|229268320, gi... - gi\|229603912\|ref\|YP_002868624.1\| shikimate dehydrogenase [Bacillus anthracis str. A0248], gi\|2292683... gi\|47529857, gi\|... - gi\|47529857\|ref\|YP_021206.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30264406, gi\|... - gi\|30264406\|ref\|NP_846783.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. Ames], gi\|30259064\|g...	250.0	[0..8]	[286..3]
gi\|68177935, gi\|... - gi\|95928775\|ref\|ZP_01311521.1\| shikimate 5-dehydrogenase [Desulfuromonas acetoxidans DSM 684], gi\|95...	249.0	[0..1]	[284..1]
AROE_BACC1 - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=aroE PE=3 SV=1	248.0	[0..8]	[284..3]
AROE_BACCR - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1... gi\|228653732, gi... - gi\|229129615\|ref\|ZP_04258583.1\| Shikimate dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228653732\|gb... gi\|229111808, gi... - gi\|229111808\|ref\|ZP_04241354.1\| Shikimate dehydrogenase [Bacillus cereus Rock1-15], gi\|228671564\|gb\|... gi\|228723285, gi... - gi\|229048041\|ref\|ZP_04193616.1\| Shikimate dehydrogenase [Bacillus cereus AH676], gi\|228723285\|gb\|EEL... gi\|228799083, gi... - gi\|228960604\|ref\|ZP_04122251.1\| Shikimate dehydrogenase [Bacillus thuringiensis serovar pakistani st... gi\|229180612, gi... - gi\|229180612\|ref\|ZP_04307953.1\| Shikimate dehydrogenase [Bacillus cereus 172560W], gi\|228602855\|gb\|E... gi\|228630904, gi... - gi\|229152538\|ref\|ZP_04280728.1\| Shikimate dehydrogenase [Bacillus cereus m1550], gi\|228630904\|gb\|EEK... gi\|229146906, gi... - gi\|229146906\|ref\|ZP_04275270.1\| Shikimate dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228636505\|gb... gi\|206735143, gi... - gi\|206969455\|ref\|ZP_03230409.1\| shikimate 5-dehydrogenase [Bacillus cereus AH1134], gi\|206735143\|gb\|... AROE_BACC4 - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain B4264) GN=aroE PE=3 SV=1	247.0	[0..8]	[284..3]
gi\|47569330, gi\|... - gi\|47569330\|ref\|ZP_00240014.1\| shikimate 5-dehydrogenase [Bacillus cereus G9241], gi\|47554001\|gb\|EAL...	245.0	[0..8]	[284..3]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFTGATRVL GIIGQPVSHS LSPLMQNAAL QAMGLDYAYV PFAVEEDCLA DAVRGLAALG  60
   61 VVGFNVTIPH KSAILPLLDR LSPEAELIGA ANVVKREGSD LVGYNTDGTG FIQSLSEDLG 120
  121 FTPAGCRILV MGAGGAARAA VASLAGAGAA SVVIANRSIA RGEELSAAFR RHFIGTQFAA 180
  181 IPLDPENLNR CVQNFDLLVN TSSVGMGGTA FPGMDLSRMG PHGAVYDMVY VPAVTPLLAE 240
  241 AERCGIRYAN GIGMLAAQGE CALELWTGVR PPEGLMKACL MAALMS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2hk7A
Description:	No description for 2hk7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits