YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996575, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996575, gi|....

Description	E-value	Query Range	Subject Range
gi\|82714507, gi\|... - gi\|82738427\|ref\|ZP_00901260.1\| RNA methyltransferase TrmH, group 1 [Pseudomonas putida F1], gi\|82714... tr\|I7C0S9\|I7C0S9... - RNA methyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=yfhQ PE=4 SV=1	237.0	[0..11]	[253..28]
gi\|78369010, gi\|... - gi\|78369010\|ref\|ZP_00839189.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. PV-4], gi\|7835897...	237.0	[0..12]	[247..17]
gi\|95109213, gi\|... - gi\|95109213\|emb\|CAK13910.1\| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ... gi\|95109213 - gi\|95109213\|emb\|CAK13910.1\| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ...	235.0	[0..12]	[253..1]
gi\|26987575, gi\|... - gi\|26987575\|ref\|NP_743000.1\| RNA methyltransferase [Pseudomonas putida KT2440], gi\|24982250\|gb\|AAN66...	234.0	[0..12]	[253..1]
gi\|218889899, gi... - gi\|218889899\|ref\|YP_002438763.1\| putative methyltransferase [Pseudomonas aeruginosa LESB58], gi\|2187... gi\|194553493, gi... - gi\|254242508\|ref\|ZP_04935830.1\| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192], gi\|19... gi\|116051842, gi... - gi\|116051842\|ref\|YP_789315.1\| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115...	233.0	[0..12]	[253..1]
gi\|67086301, gi\|... - gi\|67156542\|ref\|ZP_00418135.1\| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii AvOP], gi...	232.0	[0..13]	[253..30]
gi\|15599012, gi\|... - gi\|9949991\|gb\|AAG07204.1\|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1], gi\|15... gi\|11351452 - pir\|\|B83169 probable methyltransferase PA3817 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|126168652, gi... - gi\|254236721\|ref\|ZP_04930044.1\| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719], gi\|1...	232.0	[0..12]	[253..1]
tr\|Q887A4\|Q887A4... - RNA methyltransferase, TrmH family, group 1 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PS... gi\|28851865, gi\|... - gi\|28868627\|ref\|NP_791246.1\| RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000], gi...	231.0	[0..12]	[253..1]
gi\|114047315, gi... - gi\|78692444\|ref\|ZP_00856967.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. MR-7], gi\|7850815...	230.0	[0..12]	[252..1]
gi\|78688378, gi\|... - gi\|78688378\|ref\|ZP_00853075.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. ANA-3], gi\|785038...	230.0	[0..12]	[252..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHEVTGGV SLKERVAIVL VEPQSPGNVG MVCRAMKNMG LGELRIVKGC RLDHPEALKF  60
   61 AVSARDLLER ARVFESLEDA LSDTELSVAT TRRHGKYRQE IFSPKEIVSK FAANLAGNRA 120
  121 ALVFGREDNG LTTDELSLCR WHATIPSSEE YGSLNLAQAV MVFCYELFTS LGSRTVGGED 180
  181 RPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1v2xA
Description:	TrmH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
tRNA methyltransferase activity	3.35439517507384	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	3.10060782124076	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.87460031907348	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [184-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSAETEPLF EHMERTLMRI GYLNPQNPAH LMRSLRRIFA RSELDSREVA ILRGMMTQID  60
   61 WAADQFKGKK GA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: