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View Structure Prediction Details

Protein: gi|39996575, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996575, gi|....

Description E-value Query
Range
Subject
Range
gi|82714507, gi|... - gi|82738427|ref|ZP_00901260.1| RNA methyltransferase TrmH, group 1 [Pseudomonas putida F1], gi|82714...
tr|I7C0S9|I7C0S9... - RNA methyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=yfhQ PE=4 SV=1
237.0 [0..11] [253..28]
gi|78369010, gi|... - gi|78369010|ref|ZP_00839189.1| RNA methyltransferase TrmH, group 1 [Shewanella sp. PV-4], gi|7835897...
237.0 [0..12] [247..17]
gi|95109213, gi|... - gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ...
gi|95109213 - gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ...
235.0 [0..12] [253..1]
gi|26987575, gi|... - gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440], gi|24982250|gb|AAN66...
234.0 [0..12] [253..1]
gi|218889899, gi... - gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58], gi|2187...
gi|194553493, gi... - gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192], gi|19...
gi|116051842, gi... - gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14], gi|115...
233.0 [0..12] [253..1]
gi|67086301, gi|... - gi|67156542|ref|ZP_00418135.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii AvOP], gi...
232.0 [0..13] [253..30]
gi|15599012, gi|... - gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1], gi|15...
gi|11351452 - pir||B83169 probable methyltransferase PA3817 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|126168652, gi... - gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719], gi|1...
232.0 [0..12] [253..1]
tr|Q887A4|Q887A4... - RNA methyltransferase, TrmH family, group 1 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PS...
gi|28851865, gi|... - gi|28868627|ref|NP_791246.1| RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000], gi...
231.0 [0..12] [253..1]
gi|114047315, gi... - gi|78692444|ref|ZP_00856967.1| RNA methyltransferase TrmH, group 1 [Shewanella sp. MR-7], gi|7850815...
230.0 [0..12] [252..1]
gi|78688378, gi|... - gi|78688378|ref|ZP_00853075.1| RNA methyltransferase TrmH, group 1 [Shewanella sp. ANA-3], gi|785038...
230.0 [0..12] [252..1]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHEVTGGV SLKERVAIVL VEPQSPGNVG MVCRAMKNMG LGELRIVKGC RLDHPEALKF  60
   61 AVSARDLLER ARVFESLEDA LSDTELSVAT TRRHGKYRQE IFSPKEIVSK FAANLAGNRA 120
  121 ALVFGREDNG LTTDELSLCR WHATIPSSEE YGSLNLAQAV MVFCYELFTS LGSRTVGGED 180
  181 RPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.0
Match: 1v2xA
Description: TrmH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA methyltransferase activity 4.77771076540343 bayes_pls_golite062009
methyltransferase activity 4.0901595540349 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.01958090893547 bayes_pls_golite062009
rRNA methyltransferase activity 3.659149846946 bayes_pls_golite062009
tRNA methyltransferase activity 3.35439517507384 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 3.10060782124076 bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity 2.87460031907348 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 2.59156540645412 bayes_pls_golite062009
transferase activity 1.84002196534744 bayes_pls_golite062009
catalytic activity 1.16774040077235 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 0.47764353619615 bayes_pls_golite062009
N-methyltransferase activity 0.0655574594365502 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [184-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSAETEPLF EHMERTLMRI GYLNPQNPAH LMRSLRRIFA RSELDSREVA ILRGMMTQID  60
   61 WAADQFKGKK GA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle