YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996551, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996551, gi|....

Description	E-value	Query Range	Subject Range
gi\|56419562, gi\|... - gi\|56419562\|ref\|YP_146880.1\| 3-hydroxyisobutyrate dehydrogenase [Geobacillus kaustophilus HTA426], g...	214.0	[0..2]	[288..1]
gi\|89336363, gi\|... - gi\|89896915\|ref\|YP_520402.1\| tartronate semialdehyde reductase [Desulfitobacterium hafniense Y51], g...	213.0	[0..3]	[288..1]
gi\|219667232, gi... - gi\|68207984\|ref\|ZP_00560124.1\| 2-hydroxy-3-oxopropionate reductase [Desulfitobacterium hafniense DCB...	211.0	[0..3]	[288..1]
gi\|52079994, gi\|... - gi\|52785369\|ref\|YP_091198.1\| YkwC [Bacillus licheniformis ATCC 14580], gi\|52347871\|gb\|AAU40505.1\| Yk...	209.0	[0..1]	[286..1]
gi\|25283637 - pir\|\|G97310 dehydrogenase related to 3-hydroxyisobutyrate dehydrogenase, YKWC B. subtilis ortholog [... gi\|15896585, gi\|... - gi\|15896585\|ref\|NP_349934.1\| 3-hydroxyisobutyrate dehydrogenase [Clostridium acetobutylicum ATCC 824...	209.0	[0..4]	[288..7]
3HIDH_DICDI - Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 ... gi\|66801237, gi\|... - gi\|66801237\|ref\|XP_629544.1\| 3-hydroxyisobutyrate dehydrogenase [Dictyostelium discoideum AX4], gi\|6...	208.0	[0..3]	[288..23]
gi\|77684736, gi\|... - gi\|77684736\|ref\|ZP_00800158.1\| 2-hydroxy-3-oxopropionate reductase [Alkaliphilus metalliredigenes QY...	208.0	[0..2]	[288..1]
gi\|29344821, gi\|... - gi\|29377354\|ref\|NP_816508.1\| 2-hydroxy-3-oxopropionate reductase [Enterococcus faecalis V583], gi\|29... gi\|238858473, gi... - gi\|238858473\|ref\|ZP_04648688.1\| 2-hydroxy-3-oxopropionate reductase [Enterococcus faecalis TUSoD Ef1... gi\|227554311, gi... - gi\|227554311\|ref\|ZP_03984358.1\| 2-hydroxy-3-oxopropionate reductase [Enterococcus faecalis HH22], gi... gi\|229549004, gi... - gi\|229549004\|ref\|ZP_04437729.1\| 2-hydroxy-3-oxopropionate reductase [Enterococcus faecalis ATCC 2920...	206.0	[0..2]	[286..1]
gi\|49478504, gi\|... - gi\|49478504\|ref\|YP_038103.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar konk... gi\|218905179, gi... - gi\|218905179\|ref\|YP_002453013.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus AH820], gi\|218... gi\|52141450, gi\|... - gi\|52141450\|ref\|YP_085380.1\| 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase [B... gi\|196034924, gi... - gi\|196034924\|ref\|ZP_03102331.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus W], gi\|19599246... gi\|228811750, gi... - gi\|228947763\|ref\|ZP_04110050.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar m... gi\|228935363, gi... - gi\|228935363\|ref\|ZP_04098183.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar a... gi\|228830382, gi... - gi\|228929092\|ref\|ZP_04092119.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar p... gi\|228842870, gi... - gi\|228916683\|ref\|ZP_04080248.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar p... gi\|228659701, gi... - gi\|229123566\|ref\|ZP_04252761.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus cereus 95/8201], gi\|228...	206.0	[0..5]	[286..8]
gi\|42739084, gi\|... - gi\|42783156\|ref\|NP_980403.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus ATCC 10987], gi\|42...	206.0	[0..5]	[288..8]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKVGFLGL GTVGRHMAAN LLKGNYELAV YDSDPAAVAD LAALGATGAA TPREVAKGRD  60
   61 IVIHIRPEKE RLRPDIYGPD GIFAGIDPGT ILVDMGTHSL TSTMEMADEA AKHRVMFLDA 120
  121 PVWGTKEHAA NGLLTILAGG DPSLVGRCRE LFSFFGLNII HVGSIGDATR MKFVVNLVQA 180
  181 ELMQALAESI VFGEKLGFTA DRILEVLDSG GVASPLFHSK GRSIARGDFT RNLALKYVHE 240
  241 QLELVLEKAE KLGLELPAAK VACATYEQGV KDGRGEEDFS SVVKVLRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.30103
Match:	2i9pA
Description:	No description for 2i9pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits