YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996537, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996537, gi|....

Description	E-value	Query Range	Subject Range
gi\|78193707, gi\|... - gi\|78222452\|ref\|YP_384199.1\| peptidase M48, Ste24p [Geobacter metallireducens GS-15], gi\|78193707\|gb...	225.0	[0..1]	[264..14]
gi\|110602135, gi... - gi\|222056113\|ref\|YP_002538475.1\| peptidase M48 Ste24p [Geobacter sp. FRC-32], gi\|221565402\|gb\|ACM213...	208.0	[0..19]	[264..19]
gi\|7459518 - pir\|\|B70384 conserved hypothetical protein aq_972 - Aquifex aeolicus gi\|15606285, gi\|... - gi\|2983491\|gb\|AAC07070.1\| hypothetical protein aq_972 [Aquifex aeolicus VF5], gi\|15606285\|ref\|NP_213...	200.0	[0..1]	[263..1]
gi\|28900716, gi\|... - gi\|28900716\|ref\|NP_800371.1\| hypothetical protein VPA0861 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28809162 - gi\|28809162\|dbj\|BAC62204.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153838904, gi... - gi\|153838904\|ref\|ZP_01991571.1\| Zn-dependent protease with chaperone function [Vibrio parahaemolytic...	196.0	[0..8]	[252..7]
gi\|78355154, gi\|... - gi\|78355154\|ref\|YP_386603.1\| putative lipoprotein [Desulfovibrio desulfuricans subsp. desulfuricans ...	195.0	[0..1]	[253..5]
gi\|86148331, gi\|... - gi\|86148331\|ref\|ZP_01066625.1\| hypothetical protein MED222_06620 [Vibrio sp. MED222], gi\|85833886\|gb...	195.0	[0..8]	[253..7]
gi\|37676415, gi\|... - gi\|37676415\|ref\|NP_936811.1\| Zn-dependent protease with chaperone function [Vibrio vulnificus YJ016]...	195.0	[0..8]	[253..11]
gi\|91226163, gi\|... - gi\|91226163\|ref\|ZP_01261053.1\| hypothetical protein V12G01_08620 [Vibrio alginolyticus 12G01], gi\|91...	194.0	[0..1]	[253..5]
gi\|88811137, gi\|... - gi\|88811137\|ref\|ZP_01126393.1\| Peptidase M48, Ste24p [Nitrococcus mobilis Nb-231], gi\|88791676\|gb\|EA...	194.0	[0..1]	[255..1]
gi\|27366700, gi\|... - gi\|27366700\|ref\|NP_762227.1\| Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6]...	194.0	[0..8]	[253..11]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAKWLLGP LAALGILAGC ATSMTDIKGF NMISIEQEKE LGNKFAVEIE KQQQPVNDPE  60
   61 VQRYVDKVGK RLLSGARAVE FDYVFKVVKD DSVNAFAIPG GRVYVHTGLL KAADNETELA 120
  121 GVLAHEINHA VARHGTRQMT QEYGYSLVLS LVLGDNPNML AQLAGQLFGK AGMMSYSREY 180
  181 ENQADFLGVE TMYKAGYNPN GLTSFFQKLN AMDGGTQSNV ARFFSTHPLT SERIQRVQAE 240
  241 IAKLPPQRYL TDETEFKKIK GRLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.99
Match:	1dmtA
Description:	Neutral endopeptidase (neprilysin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits