YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983408, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983408, gi|....

Description	E-value	Query Range	Subject Range
gi\|119865539, gi... - gi\|119946935\|ref\|YP_944615.1\| hybrid sensor and regulator fused [Psychromonas ingrahamii 37], gi\|119...	140.0	[0..1]	[144..507]
gi\|75906539, gi\|... - gi\|75906539\|ref\|YP_320835.1\| Signal transduction histidine kinase (STHK) with CheB and CheR activity...	139.0	[0..1]	[144..1084]
gi\|88803984, gi\|... - gi\|88803984\|ref\|ZP_01119504.1\| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2...	137.0	[0..2]	[148..1066]
gi\|148654385, gi... - gi\|148654385\|ref\|YP_001274590.1\| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. R...	136.0	[0..2]	[149..260]
gi\|17229208, gi\|... - gi\|17229208\|ref\|NP_485756.1\| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120], gi\|171... gi\|25532944 - pir\|\|AF2020 two-component hybrid sensor and regulator all1716 [imported] - Nostoc sp. (strain PCC 71...	135.0	[0..1]	[148..1018]
gi\|68184751, gi\|... - gi\|91774312\|ref\|YP_567004.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	134.0	[0..2]	[139..200]
gi\|20907888, gi\|... - gi\|21229307\|ref\|NP_635229.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	134.0	[0..2]	[141..411]
gi\|86609102 - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Cyanobacteria bacteriu... gi\|86557644, gi\|... - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2...	134.0	[0..1]	[147..884]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNEIEVDI KVPNQTRYLS LIGRIGEDIA KELDRYDGDR ETLAYHINLV LTEAMVNAIK  60
   61 HANAGDPDKM VHIYINISDQ DLMIRVYDSG QGFDINTIPA PDFDTLEDRG RGIFIIKSLM 120
  121 DTVRYTKIAD GNVLEMTKCL RTSFPPLPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits