YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_GEOSL.

Description	E-value	Query Range	Subject Range
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	311.0	[0..1]	[257..6]
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	308.0	[0..1]	[257..159]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	308.0	[0..1]	[257..6]
gi\|84375415, gi\|... - gi\|84393971\|ref\|ZP_00992711.1\| prolipoprotein diacylglyceryl transferase [Vibrio splendidus 12B01], ... gi\|86147415, gi\|... - gi\|86147415\|ref\|ZP_01065728.1\| prolipoprotein diacylglyceryl transferase [Vibrio sp. MED222], gi\|858...	308.0	[0..1]	[257..6]
LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus GN=lgt PE=3 SV=2 LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain CMCP6) GN=lgt PE=3 SV=2	306.0	[0..1]	[257..6]
LGT_VIBVY - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain YJ016) GN=lgt PE=3 SV=1	306.0	[0..1]	[257..6]
LGT_VIBF1 - Prolipoprotein diacylglyceryl transferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=lgt PE=...	304.0	[0..1]	[256..6]
gi\|121546811, gi... - gi\|121591330\|ref\|ZP_01678619.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 2740-80],... gi\|229530479, gi... - gi\|229530479\|ref\|ZP_04419867.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 12129(1)]... gi\|124114027, gi... - gi\|153216962\|ref\|ZP_01950726.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 1587], gi... gi\|229608725, gi... - gi\|229608725\|ref\|YP_002879373.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MJ-1236]... gi\|153803568, gi... - gi\|153803568\|ref\|ZP_01958154.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-3], g... gi\|153820131, gi... - gi\|153820131\|ref\|ZP_01972798.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae NCTC 8457... gi\|229354244, gi... - gi\|229508720\|ref\|ZP_04398213.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae B33], gi\|... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor... gi\|116187791, gi... - gi\|75828824\|ref\|ZP_00758161.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae MO... LGT_VIBC3 - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classi... gi\|121730085, gi... - gi\|75814358\|ref\|ZP_00744958.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae GN=lgt PE=3 SV=1 gi\|197750775, gi... - gi\|254291914\|ref\|ZP_04962696.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae AM-19226]... LGT_VIBCM - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lgt PE=3 ... gi\|148875364, gi... - gi\|153829175\|ref\|ZP_01981842.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 623-39], ... gi\|229505706, gi... - gi\|229505706\|ref\|ZP_04395216.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae BX 330286... gi\|153826522, gi... - gi\|153826522\|ref\|ZP_01979189.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-2], g... gi\|229350183, gi... - gi\|229512934\|ref\|ZP_04402401.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TMA 21], ... gi\|229519530, gi... - gi\|229519530\|ref\|ZP_04408973.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae RC9], gi\|... gi\|229342197, gi... - gi\|229520964\|ref\|ZP_04410386.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TM 11079-...	301.0	[0..1]	[257..6]
LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) ... LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea GN=lgt PE=3 SV=1	300.0	[0..1]	[255..2]
gi\|254226522, gi... - gi\|75818000\|ref\|ZP_00748236.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5...	299.0	[0..1]	[257..6]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFPHIDPVF FRLGHLEFRW YGLMYILGFI AAYFIVRRAA GRRGLALTQD DVADVIFSLA  60
   61 IGVILGGRLG YILFYNLSYY LSHPLKLFAV WEGGMSFHGG LLGVILAGVY VARQKKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPVLADICA PAAPVGLGLG RLGNFINGEL YGRVTDVPWG IIFPGGGGVP RHPSQLYEAV  60
   61 LEGPVLFLIL MAVGRRERPA GVVFWTFIAF YGLFRFLVEF FREPDAQLGL LAGPFSMGQL 120
  121 LSFPMFLLGL TMAVLVSRRK VGP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.954	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits