YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983372, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983372, gi|....

Description	E-value	Query Range	Subject Range
gi\|238901893, gi... - gi\|238901893\|ref\|YP_002927689.1\| hypothetical protein BWG_2492 [Escherichia coli BW2952], gi\|2388629... gi\|169890166, gi... - gi\|170082331\|ref\|YP_001731651.1\| hypothetical protein ECDH10B_2924 [Escherichia coli str. K-12 subst... gi\|85675577, gi\|... - gi\|89109543\|ref\|AP_003323.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YGCH_ECOLI - Hypothetical protein ygcH - Escherichia coli EG13115 - CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein... EG13115 - CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein...	247.0	[0..1]	[201..1]
gi\|82778123, gi\|... - gi\|82778123\|ref\|YP_404472.1\| hypothetical protein SDY_2955 [Shigella dysenteriae Sd197], gi\|81242271...	245.0	[0..1]	[201..1]
gi\|194407237, gi... - gi\|194448933\|ref\|YP_002046897.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. ... gi\|167993180, gi... - gi\|205328771\|gb\|EDZ15535.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|205338034, gi... - gi\|205338034\|gb\|EDZ24798.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|16766245, gi\|... - gi\|16766245\|ref\|NP_461860.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421489\|... lcl\|NC_016856.1_... - [gene=ygcH] [protein=putative cytoplasmic protein] [protein_id=YP_005239052.1] [location=complement(...	224.0	[0..1]	[201..1]
gi\|62129074, gi\|... - gi\|62181441\|ref\|YP_217858.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	218.0	[0..1]	[201..1]
gi\|82545171, gi\|... - gi\|82545171\|ref\|YP_409118.1\| hypothetical protein SBO_2764 [Shigella boydii Sb227], gi\|81246582\|gb\|A...	217.0	[0..1]	[201..1]
gi\|187733988, gi... - gi\|75176379\|ref\|ZP_00696523.1\| hypothetical protein SboyB_01003608 [Shigella boydii BS512], gi\|18773...	216.0	[0..1]	[201..1]
gi\|195939469 - gi\|195939469\|ref\|ZP_03084851.1\| hypothetical protein EscherichcoliO157_24163 [Escherichia coli O157:... gi\|208806548, gi... - gi\|208806548\|ref\|ZP_03248885.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|208812308, gi... - gi\|208812308\|ref\|ZP_03253637.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|208820668, gi... - gi\|208820668\|ref\|ZP_03260988.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|25391291, gi\|... - pir\|\|C85925 hypothetical protein Z4065 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|187769614, gi... - gi\|187769614\|gb\|EDU33458.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189003332, gi... - gi\|189003332\|gb\|EDU72318.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|12517213, gi\|... - gi\|15803273\|ref\|NP_289305.1\| hypothetical protein Z4065 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|189372160, gi... - gi\|189372160\|gb\|EDU90576.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|13363081, gi\|... - gi\|15832864\|ref\|NP_311637.1\| hypothetical protein ECs3610 [Escherichia coli O157:H7], gi\|13363081\|db... gi\|189377513, gi... - gi\|189377513\|gb\|EDU95929.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|188015784, gi... - gi\|188015784\|gb\|EDU53906.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189357354, gi... - gi\|189357354\|gb\|EDU75773.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|168762842, gi... - gi\|189366898\|gb\|EDU85314.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|189362000, gi... - gi\|189362000\|gb\|EDU80419.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str. EC... gi\|209399506, gi... - gi\|209399506\|ref\|YP_002272220.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 st... gi\|254594096, gi... - gi\|254794696\|ref\|YP_003079533.1\| hypothetical protein ECSP_3704 [Escherichia coli O157:H7 str. TW143... gi\|217319439, gi... - gi\|217327072\|ref\|ZP_03443155.1\| CRISPR-associated protein, Cse3 family [Escherichia coli O157:H7 str... gi\|13363081, gi\|... - gi\|15832864\|ref\|NP_311637.1\| hypothetical protein ECs3610 [Escherichia coli O157:H7 str. Sakai], gi\|...	216.0	[0..1]	[201..1]
gi\|36784176, gi\|... - gi\|37524751\|ref\|NP_928095.1\| hypothetical protein plu0750 [Photorhabdus luminescens subsp. laumondii...	216.0	[0..1]	[200..1]
gi\|75235644, gi\|... - gi\|75235644\|ref\|ZP_00719818.1\| hypothetical protein EcolE1_01002628 [Escherichia coli E110019], gi\|1...	215.0	[0..1]	[201..1]
gi\|75256963, gi\|... - gi\|75256963\|ref\|ZP_00728539.1\| hypothetical protein EcolE2_01003212 [Escherichia coli E22], gi\|19306... gi\|191166800, gi... - gi\|75230033\|ref\|ZP_00716543.1\| hypothetical protein EcolB7_01001721 [Escherichia coli B7A], gi\|19116...	215.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSKVLING TACRNPYEIH RVLWKLFPED ADAERDFLFR VERSGQQSVE VLLQSRREPT  60
   61 MAASREVLLM GSKPYLLSLQ QDQQLRFMLV ANPIKTINDE SARLNSANEI KKCRVPLIRE 120
  121 EDLRAWLKRK LEGVAVIEAV EVEKRPAMNF RKAREKRVGK VQAVSFHGVL SVTDPVGLIS 180
  181 LINTGIGPAK AFGCGLLSLA RT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1wj9A
Description:	Crystal structure of a CRISPR-associated protein from thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits