YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996488, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996488, gi|....

Description	E-value	Query Range	Subject Range
YGCK_ECOLI - Hypothetical protein ygcK - Escherichia coli gi\|89109546, gi\|... - gi\|89109546\|ref\|AP_003326.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13118 - CRISP RNA (crRNA) containing Cascade antiviral complex protein / CRISPR RNA (crRNA) containing Casca... gi\|169890169, gi... - gi\|170082334\|ref\|YP_001731654.1\| hypothetical protein ECDH10B_2927 [Escherichia coli str. K-12 subst... gi\|238862912, gi... - gi\|238901896\|ref\|YP_002927692.1\| hypothetical protein BWG_2495 [Escherichia coli BW2952], gi\|2388629... EG13118 - CRISP RNA (crRNA) containing Cascade antiviral complex protein / CRISPR RNA (crRNA) containing Casca...	213.0	[0..6]	[143..6]
gi\|222831902, gi... - gi\|224172292\|ref\|XP_002339633.1\| predicted protein [Populus trichocarpa], gi\|222831902\|gb\|EEE70379.1... gi\|67981952, gi\|... - gi\|95930839\|ref\|ZP_01313570.1\| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684], ...	192.0	[0..1]	[147..1]
gi\|47104063, gi\|... - gi\|47104063\|ref\|YP_015492.1\| hypothetical protein PBPRC0038 [Photobacterium profundum SS9], gi\|46911...	178.0	[0..7]	[143..2]
gi\|882652\|gb\|AAA... - ORF_f131 gi\|882652 - gi\|882652\|gb\|AAA69269.1\| ORF_f131	170.0	[0..6]	[118..6]
gi\|106763639, gi... - gi\|119945305\|ref\|YP_942985.1\| hypothetical protein Ping_1588 [Psychromonas ingrahamii 37], gi\|119863...	134.0	[0..7]	[147..2]
gi\|88602660, gi\|... - gi\|88602660\|ref\|YP_502838.1\| hypothetical protein Mhun_1379 [Methanospirillum hungatei JF-1], gi\|881...	58.0	[0..19]	[142..28]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERTHDFMGL YQAWERLAPG PRAELRRVER PDDLLEVPAF YRLFSGRGTT EWEKGAYQRL  60
   61 IFCLPCIKHS GENISLGRAL AKGRGVGEKR LFQVVRSSEP NDMIQLRRIL RMAEPTVNWD 120
  121 LAARQLWYWN DRSKRDLLED YFLNHSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.920819
Match:	PF09485.1
Description:	No description for PF09485.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.603	N/A	N/A	a.118.1	ARM repeat
View	Download	0.590	N/A	N/A	a.118.1	ARM repeat
View	Download	0.357	N/A	N/A	a.118.8	TPR-like
View	Download	0.357	N/A	N/A	a.118.8	TPR-like
View	Download	0.271	N/A	N/A	a.118.8	TPR-like
View	Download	0.271	N/A	N/A	a.118.8	TPR-like
View	Download	0.263	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.263	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.258	N/A	N/A	a.219.1	Description not found.
View	Download	0.223	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits