YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996485, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996485, gi|....

Description	E-value	Query Range	Subject Range
DPO3_CALS4 - DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242... DPO3_THETN - DNA polymerase III polC-type OS=Thermoanaerobacter tengcongensis GN=polC PE=3 SV=1	179.0	[0..4]	[178..385]
gi\|48845866, gi\|... - gi\|78224248\|ref\|YP_385995.1\| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15], ...	175.0	[0..6]	[176..5]
gi\|158320555, gi... - gi\|158320555\|ref\|YP_001513062.1\| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs],...	173.0	[0..4]	[176..423]
gi\|125973511, gi... - gi\|67917180\|ref\|ZP_00510847.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	172.0	[0..2]	[176..424]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	172.0	[0..4]	[179..415]
gi\|114843683, gi... - gi\|167040287\|ref\|YP_001663272.1\| DNA polymerase III PolC [Thermoanaerobacter sp. X514], gi\|166854527...	172.0	[0..4]	[179..391]
gi\|37677155, gi\|... - gi\|37677155\|ref\|NP_937551.1\| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016], gi\|3720170...	170.0	[0..1]	[178..1]
gi\|27358964, gi\|... - gi\|27367395\|ref\|NP_762922.1\| DNA polymerase III, alpha subunit [Vibrio vulnificus CMCP6], gi\|2735896...	170.0	[0..1]	[178..1]
gi\|42738836, gi\|... - gi\|42782909\|ref\|NP_980156.1\| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987], gi\|4273...	169.0	[0..4]	[179..415]
gi\|254229191, gi... - gi\|75857174\|ref\|ZP_00764792.1\| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Vibr...	168.0	[0..1]	[178..1]

Back

Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNHHLQAAI DVETTGLFPG YGDRVVEVAA VLVDEGQIVS EFSSLIRVTK AIPRHVSMIH  60
   61 GITNDMLADQ PLPEEVYPAL GDFIGTALLV AHNARFDLAF LRHEFGRLGL SLNSRSACTL 120
  121 ELARRRLPEL TDHRLETVYQ HLFGAVPEGT RCHRALDDAR LTARVWGELG GGKAMKSGAL 180
  181 R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2p1jA
Description:	No description for 2p1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits