YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996424, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996424, gi|....

Description	E-value	Query Range	Subject Range
gi\|18144401, gi\|... - gi\|18309723\|ref\|NP_561657.1\| cytochrome C-type biogenesis protein [Clostridium perfringens str. 13],...	200.0	[0..5]	[228..3]
gi\|110674228, gi... - gi\|110799581\|ref\|YP_695190.1\| putative cytochrome C-type biogenesis protein [Clostridium perfringens...	199.0	[0..5]	[228..3]
gi\|110802776, gi... - gi\|110802776\|ref\|YP_698047.1\| cytochrome C biogenesis protein [Clostridium perfringens SM101], gi\|11...	198.0	[0..5]	[228..3]
DSBD_PHOLL - Thiol:disulfide interchange protein dsbD OS=Photorhabdus luminescens subsp. laumondii GN=dsbD PE=3 S... DSBD_PHOLL - Thiol:disulfide interchange protein DsbD OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15...	182.0	[0..2]	[242..171]
DSBD_VIBPA - Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210... DSBD_VIBPA - Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus GN=dsbD PE=3 SV=1	182.0	[0..5]	[242..211]
gi\|84393052, gi\|... - gi\|84393052\|ref\|ZP_00991818.1\| thiol:disulfide interchange protein precursor [Vibrio splendidus 12B0...	181.0	[0..4]	[242..217]
gi\|86147902, gi\|... - gi\|86147902\|ref\|ZP_01066207.1\| thiol:disulfide interchange protein precursor [Vibrio sp. MED222], gi...	181.0	[0..4]	[242..214]
DSBD_HAEIN - Thiol:disulfide interchange protein dsbD OS=Haemophilus influenzae GN=dsbD PE=3 SV=1 DSBD_HAEIN - Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / ...	180.0	[0..6]	[242..176]
gi\|91228458, gi\|... - gi\|91228458\|ref\|ZP_01262382.1\| thiol:disulfide interchange protein precursor [Vibrio alginolyticus 1...	179.0	[0..5]	[242..208]
gi\|90413365, gi\|... - gi\|90413365\|ref\|ZP_01221358.1\| thiol:disulfide interchange protein precursor [Photobacterium profund...	179.0	[0..3]	[242..225]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTNITFVG AFVAGLLSFL SPCVLPLIPS FITYITGLSF ADIQSEHPTH KVRQQTIVHS  60
   61 LLFIAGFTFV FVLLGASATF IGGFLHEHMN VIRKVGGALI VIFGIHVSGL VPIHLLLGEK 120
  121 RLQVHRKPAG YLGSFLVGLA FAAGWTPCIG PILASILMVA ATEETVTKGI LLLFTYSMGL 180
  181 AIPFFLSSLA MHQFLTFFNR FKKHIRILEI VTGLFLVVVG VMIFTNYLSV LSRYTMKWFG 240
  241 GM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits