YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996401, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996401, gi|....

Description	E-value	Query Range	Subject Range
gi\|78223624, gi\|... - gi\|78223624\|ref\|YP_385371.1\| CheW protein [Geobacter metallireducens GS-15], gi\|78194879\|gb\|ABB32646...	148.0	[0..1]	[164..15]
gi\|39983283, gi\|... - gi\|39996403\|ref\|NP_952354.1\| purine-binding chemotaxis protein CheW [Geobacter sulfurreducens PCA], ...	148.0	[0..1]	[164..1]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	142.0	[0..2]	[156..10]
gi\|85859028, gi\|... - gi\|85859028\|ref\|YP_461230.1\| chemotaxis protein [Syntrophus aciditrophicus SB], gi\|85722119\|gb\|ABC77...	141.0	[0..11]	[156..22]
gi\|71742747, gi\|... - gi\|71836535\|ref\|ZP_00676303.1\| CheW-like protein [Pelobacter propionicus DSM 2379], gi\|71742747\|gb\|E...	141.0	[0..1]	[156..1]
gi\|95930955, gi\|... - gi\|95930955\|ref\|ZP_01313684.1\| CheW protein [Desulfuromonas acetoxidans DSM 684], gi\|95132964\|gb\|EAT...	140.0	[0..1]	[163..1]
tr\|Q888V5\|Q888V5... - Chemotaxis protein CheW OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cheW-1 PE=4 SV=1 gi\|28851368, gi\|... - gi\|28868131\|ref\|NP_790750.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213970200, gi... - gi\|213970200\|ref\|ZP_03398331.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato T1], gi\|213...	139.0	[0..2]	[164..10]
gi\|63254746, gi\|... - gi\|66044039\|ref\|YP_233880.1\| CheW-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325474...	139.0	[0..2]	[161..10]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHADTTETR QYLTFTLAGE VFGVDVAKVR EILEWSSITK VPQTPEFMRG VINLRGSVVP  60
   61 VIDLRQKFGM PETERSINTC IIVVEVETGA ETLVLGMLAD SVQEVFELEG VNIEPAPRIG 120
  121 TKLDTSFLKG MGKRGDAFLM ILDIDRVFGG DDLAGLAAAG ERAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits