YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1281_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1281_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	332.0	[0..2]	[246..20]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	331.0	[0..2]	[246..19]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	329.0	[0..1]	[249..1]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	328.0	[0..4]	[246..2]
gi\|116250536, gi... - gi\|116250536\|ref\|YP_766374.1\| putrescine ABC transporter ATP-binding protein [Rhizobium leguminosaru...	328.0	[0..2]	[247..19]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	327.0	[0..3]	[249..7]
gi\|45914913, gi\|... - gi\|69278904\|ref\|ZP_00613912.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Mesorhizob...	326.0	[0..2]	[246..19]
gi\|13475457, gi\|... - gi\|14026209\|dbj\|BAB52807.1\| ABC transporter, polyamine transport protein, ATP-binding protein [Mesor...	326.0	[0..2]	[249..19]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHIVEVRD LCHCYPDGTE ALRGITFRIH HGESVAVVGA NGAGKSTLLL HLNGYLAPTR  60
   61 GDVRIGDTPV VRTTLPEVRR TVGMVFQDPD DQLFMPTVFD DVAFGPLNLG LPPAEVERRV 120
  121 ADALEQVGVA HLHNKPPYRL SGGEKRRVAI ATVLSMSPDI LVLDEPTTGL DPYARRQIMG 180
  181 LLRDFKHTKI ITSHDLDMVM ELCERTIVLR EGRVAADGPT RDIFGNDELL ATCRLERPLS 240
  241 MQGCPVCGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.39794
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits