YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996336, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996336, gi|....

Description	E-value	Query Range	Subject Range
gi\|78222959, gi\|... - gi\|78222959\|ref\|YP_384706.1\| signal peptide peptidase A [Geobacter metallireducens GS-15], gi\|781942...	205.0	[0..2]	[260..35]
gi\|110600977, gi... - gi\|222055988\|ref\|YP_002538350.1\| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32], gi\|...	205.0	[0..7]	[259..40]
gi\|77545560, gi\|... - gi\|77919477\|ref\|YP_357292.1\| signal peptide peptidase SppA, 67K type [Pelobacter carbinolicus DSM 23...	204.0	[0..6]	[258..39]
gi\|20807332 - gi\|20807332\|ref\|NP_622503.1\| Periplasmic serine protease (ClpP class) [Thermoanaerobacter tengcongen... gi\|20515846, gi\|... - gi\|20807332\|ref\|NP_622503.1\| periplasmic serine protease (ClpP class) [Thermoanaerobacter tengcongen...	204.0	[0..6]	[257..37]
gi\|29347289, gi\|... - gi\|29347289\|ref\|NP_810792.1\| protease IV [Bacteroides thetaiotaomicron VPI-5482], gi\|29339188\|gb\|AAO...	202.0	[0..1]	[251..300]
gi\|59480351, gi\|... - gi\|59712250\|ref\|YP_205026.1\| protease IV (signal peptide peptidase) [Vibrio fischeri ES114], gi\|5948...	198.0	[0..10]	[247..329]
gi\|53764466, gi\|... - gi\|75908676\|ref\|YP_322972.1\| peptidase S49, protease IV [Anabaena variabilis ATCC 29413], gi\|7570240...	197.0	[0..3]	[251..310]
gi\|186464164, gi... - gi\|23128294\|ref\|ZP_00110145.1\| COG0616: Periplasmic serine proteases (ClpP class) [Nostoc punctiform...	197.0	[0..4]	[252..313]
gi\|85774457, gi\|... - gi\|86157946\|ref\|YP_464731.1\| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C], gi\|85...	197.0	[0..2]	[260..44]
gi\|17133726, gi\|... - gi\|17232082\|ref\|NP_488630.1\| protease IV [Nostoc sp. PCC 7120], gi\|17133726\|dbj\|BAB76289.1\| protease... gi\|25290101 - pir\|\|AF2379 proteinase IV [imported] - Nostoc sp. (strain PCC 7120)	196.0	[0..6]	[247..313]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAATIGDGI GYAEVKGPII DSQETVKQLD DLRKKSSVKA VVLRVESPGG VIGPSQEIYA  60
   61 AVKRLAATKK VVVSMGSVAA SGGYHVAVPA AVIYANPGTI TGSIGVLMKL SNIEGLMDKV 120
  121 GLKAFTLKSG KFKDSGSPVR KLTEEERAVL QGVIDNLHDQ FVRAVAEGRQ LPVEEVRRLA 180
  181 DGRVYTGEQA LRLKLVDRLG TLHDAVMEAG RLAGIEGEPT LIIPPKKRKL LRDMLFGEVA 240
  241 EAVRGSVRKE EGLSFSYELE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits