YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996301, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996301, gi|....

Description	E-value	Query Range	Subject Range
gi\|75812571, gi\|... - gi\|75812571\|ref\|YP_320190.1\| SNase-like nuclease [Anabaena variabilis ATCC 29413], gi\|75705327\|gb\|AB...	161.0	[0..12]	[184..1]
gi\|157412143 - gi\|157412143\|ref\|YP_001481484.1\| putative nuclease [Escherichia coli APEC O1] gi\|99867168 - gi\|99867168\|gb\|ABF67813.1\| putative nuclease [Escherichia coli APEC O1]	158.0	[0..9]	[183..14]
gi\|46133540 - gi\|46133540\|ref\|ZP_00157349.2\| COG1525: Micrococcal nuclease (thermonuclease) homologs [Haemophilus ...	158.0	[0..17]	[184..6]
Y1296_HAEIN - Uncharacterized endonuclease HI_1296 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... Y1296_HAEIN, YC9... - (Q57519) Hypothetical protein HI1296 precursor, Uncharacterized endonuclease HI_1296 OS=Haemophilus ...	155.0	[0..17]	[183..6]
gi\|68250146, gi\|... - gi\|68250146\|ref\|YP_249258.1\| micrococcal nuclease-like protein [Haemophilus influenzae 86-028NP], gi...	155.0	[0..17]	[183..6]
gi\|38259464, gi\|... - gi\|38347987\|ref\|NP_941236.1\| putative exported nuclease [Serratia marcescens], gi\|38259464\|emb\|CAE51...	155.0	[0..9]	[183..1]
gi\|71839174, gi\|... - gi\|71839174\|ref\|ZP_00678927.1\| nuclease (SNase-like) [Pelobacter propionicus DSM 2379], gi\|71740384\|...	153.0	[0..16]	[182..4]
gi\|30995439 - gi\|30995439\|ref\|NP_439447.2\| nuclease [Haemophilus influenzae Rd KW20]	153.0	[0..21]	[183..3]
gi\|38505619, gi\|... - gi\|38505619\|ref\|NP_942240.1\| hypothetical protein sll5084 [Synechocystis sp. PCC 6803], gi\|38423643\|...	153.0	[0..1]	[182..50]
gi\|15602746, gi\|... - gi\|15602746\|ref\|NP_245818.1\| hypothetical protein PM0881 [Pasteurella multocida subsp. multocida str...	153.0	[0..19]	[183..5]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTLWLGVT LLLMGLILAL YLLTPERSPG PLKSSVPPAG DRVITVKDGD TVVIAPAGGG  60
   61 KPYPCRLYGI DTPETPKKRK QGQPYGQEAA DELSSLVLGK EVKVLLTGDT TYNRQVGTIE 120
  121 VDGVNVNLEM VRRGYAWAYV QYLRRPHVSE YREAEEDARR QRLGLWQDHN PVPPWEFRKR 180
  181 QRLQKLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2f0uA
Description:	No description for 2f0uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits