YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996299, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996299, gi|....

Description	E-value	Query Range	Subject Range
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	177.0	[0..3]	[156..93]
gi\|77954715, gi\|... - gi\|77954715\|ref\|ZP_00819103.1\| RNA methyltransferase TrmH, group 3 [Marinobacter aquaeolei VT8], gi\|...	173.0	[0..2]	[152..92]
gi\|134052871, gi... - gi\|88945260\|ref\|ZP_01148474.1\| RNA methyltransferase TrmH, group 2 [Desulfotomaculum reducens MI-1],...	173.0	[0..7]	[155..1]
gi\|98661682 - gi\|98661682\|dbj\|GAA01269.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	171.0	[0..1]	[156..9]
gi\|207088581 - gi\|207088581\|gb\|EDZ65853.1\| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] gi\|254435470, gi... - gi\|254435470\|ref\|ZP_05048977.1\| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AF... gi\|77166275, gi\|... - gi\|77166275\|ref\|YP_344800.1\| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707], ...	171.0	[0..7]	[155..2]
gi\|48859457, gi\|... - gi\|67875040\|ref\|ZP_00504559.1\| RNA methyltransferase TrmH, group 3 [Clostridium thermocellum ATCC 27... gi\|196198671, gi... - gi\|196251913\|ref\|ZP_03150578.1\| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellu...	170.0	[0..3]	[154..125]
gi\|28212189, gi\|... - gi\|28212189\|ref\|NP_783133.1\| 23S rRNA methyltransferase [Clostridium tetani E88], gi\|28204633\|gb\|AAO...	169.0	[0..3]	[152..91]
gi\|221089776, gi... - gi\|221089776\|ref\|ZP_03559286.1\| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC6... gi\|229500404, gi... - gi\|229500404\|ref\|ZP_04394068.1\| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC5... gi\|56419019, gi\|... - gi\|56419019\|ref\|YP_146337.1\| rRNA methylase [Geobacillus kaustophilus HTA426], gi\|56378861\|dbj\|BAD74...	169.0	[0..5]	[156..1]
gi\|25316730 - pir\|\|F98035 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) [imported] - Streptococcus pneumo... gi\|15903354, gi\|... - gi\|15903354\|ref\|NP_358904.1\| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae R6],...	169.0	[0..3]	[152..103]
gi\|116077391, gi... - gi\|116516815\|ref\|YP_816752.1\| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D3... gi\|147928676, gi... - gi\|148992659\|ref\|ZP_01822327.1\| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68],... gi\|168483931, gi... - gi\|172042719\|gb\|EDT50765.1\| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CD... gi\|147756539, gi... - gi\|148997484\|ref\|ZP_01825089.1\| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70]... gi\|183571884, gi... - gi\|183571884\|gb\|EDT92412.1\| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP... gi\|168575914, gi... - gi\|183578281\|gb\|EDT98809.1\| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae ML... gi\|168996353, gi... - gi\|169833851\|ref\|YP_001694873.1\| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6], gi\|1...	169.0	[0..3]	[152..92]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGHQPFHIV LVEPEIPPNT GNIARLCGAT GTVLHLVGKL GFSTDDRYLK RAGLDYWSEV  60
   61 DIRYWESLDQ LRQAWPDARF FYTSKKAARC YVDAGFREGD FIVFGKETVG LPEDLLRANE 120
  121 EHCVRIPIFG KVRSLNLSTA AGIVLYEALR QTGRLADRAG ENGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1j85A
Description:	Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: