YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996280, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996280, gi|....

Description	E-value	Query Range	Subject Range
gi\|94423595, gi\|... - gi\|94496919\|ref\|ZP_01303493.1\| succinate dehydrogenase iron-sulfur protein [Sphingomonas sp. SKA58],...	214.0	[0..10]	[251..29]
gi\|87200336, gi\|... - gi\|87200336\|ref\|YP_497593.1\| succinate dehydrogenase iron-sulfur subunit [Novosphingobium aromaticiv...	213.0	[0..8]	[252..26]
gi\|85116983 - gi\|85116983\|ref\|XP_965152.1\| succinate dehydrogenase iron-sulfur protein, mitochondrial precursor [N... gi\|38567031, gi\|... - gi\|38567031\|emb\|CAE76329.1\| probable succinate dehydrogenase (ubiquinone) iron-sulfur protein precur...	212.0	[0..5]	[249..48]
gi\|39975373, gi\|... - gi\|39975373\|ref\|XP_369077.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA48509.... gi\|58257381 - gi\|58257381\|gb\|AAW69312.1\| succinate dehydrogenase ubiquinone iron-sulfur protein-like protein [Magn...	211.0	[0..4]	[249..38]
gi\|85374186, gi\|... - gi\|85374186\|ref\|YP_458248.1\| succinate dehydrogenase iron-sulfur subunit [Erythrobacter litoralis HT...	211.0	[0..11]	[251..29]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	210.0	[0..4]	[249..36]
gi\|224031477, gi... - gi\|4803711\|emb\|CAB42659.1\| iron sulfur subunit of succinate dehydrogenase [Zea mays], gi\|224031477\|g...	210.0	[0..7]	[247..46]
gi\|90300644, gi\|... - gi\|90300644\|gb\|EAS30275.1\| succinate dehydrogenase iron-sulfur protein, mitochondrial precursor [Coc...	210.0	[0..2]	[249..43]
gi\|84999578 - gi\|84999578\|ref\|XP_954510.1\| succinate dehydrogenase [ubiquinone] iron-sulfur protein [Theileria ann... gi\|65305508 - gi\|65305508\|emb\|CAI73833.1\| succinate dehydrogenase [ubiquinone] iron-sulfur protein, putative [Thei...	209.0	[0..7]	[251..18]
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	209.0	[0..11]	[251..29]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHDKNMTL TLHVWRQKGP KDPGKFEVYE AKDVSPDQSF LEMLDDVNEE LIKQGKDPIA  60
   61 FDHDCREGIC GMCSQVINGI PHGGMDRTTV CQLHMRMFKN GDAIYIEPWR ARAFPIIKDL 120
  121 VVDRGALDTI IQAGGYTSAH TGGVADGNAL LIPKDDADYA MDAAECIGCG ACVAGCPNGS 180
  181 AMLFTSAKVS QLAVLPQGKA EATRRVKAMT ETLQECGFGN CTNHYECQAA CPKGINVKFI 240
  241 ATLNREYLKS LCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits