YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996275, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996275, gi|....

Description	E-value	Query Range	Subject Range
gi\|2935421 - gi\|2935421\|gb\|AAC25987.1\| adaptive response regulatory protein [Pseudoalteromonas sp. S9]	204.0	[0..2]	[180..174]
gi\|67908812, gi\|... - gi\|91787519\|ref\|YP_548471.1\| methylated-DNA--protein-cysteine methyltransferase [Polaromonas sp. JS6...	196.0	[0..11]	[180..5]
gi\|20808873, gi\|... - gi\|20808873\|ref\|NP_624044.1\| methylated DNA-protein cysteine methyltransferase [Thermoanaerobacter t... gi\|20808873 - gi\|20808873\|ref\|NP_624044.1\| Methylated DNA-protein cysteine methyltransferase [Thermoanaerobacter t...	195.0	[0..4]	[181..14]
gi\|27359161, gi\|... - gi\|27367589\|ref\|NP_763116.1\| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus CM...	194.0	[0..14]	[181..3]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	192.0	[0..13]	[176..1]
gi\|88780111, gi\|... - gi\|88797242\|ref\|ZP_01112832.1\| methylated-DNA-protein-cysteine S-methyltransferase [Reinekea sp. MED...	192.0	[0..12]	[176..1]
gi\|13880961, gi\|... - gi\|15840768\|ref\|NP_335805.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tuber...	191.0	[0..5]	[175..2]
gi\|37200236, gi\|... - gi\|37675697\|ref\|NP_936093.1\| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus YJ...	191.0	[0..14]	[181..3]
gi\|33152202, gi\|... - gi\|33152202\|ref\|NP_873555.1\| methylated-DNA--protein-cysteine S-methyltransferase [Haemophilus ducre...	190.0	[0..10]	[180..2]
gi\|75231449 - gi\|75231449\|ref\|ZP_00717818.1\| COG2169: Adenosine deaminase [Escherichia coli B7A] gi\|157078603, gi... - gi\|75187009\|ref\|ZP_00700276.1\| COG2169: Adenosine deaminase [Escherichia coli E24377A], gi\|157156573...	188.0	[0..4]	[176..180]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDDGNSGAR RGVCVLFRDG GGGRCRGGGQ RGTQGGVPPF RVATREDMVA TVRSRYPRQA  60
   61 GENSLSREAA RQLVAYFAGE AVEFTVPLDE EHVTPFRKKV YEIVRGIGRG QVMTYGQVAV 120
  121 AAGSPGAARG VGSAMAANPL PIIVPCHRVV GVGGALTGYS GAGGIDSKRW LLELEASTGA 180
  181 GE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.9938943760254	bayes_pls_golite062009
S-methyltransferase activity	2.96219931728042	bayes_pls_golite062009
catalytic activity	2.27882522649583	bayes_pls_golite062009
methyltransferase activity	1.63681159093596	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.6341981985862	bayes_pls_golite062009
transferase activity	1.42883081715544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: