YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996245, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996245, gi|....

Description	E-value	Query Range	Subject Range
gi\|117624035, gi... - gi\|117624035\|ref\|YP_852948.1\| chemotaxis methyltransferase CheR [Escherichia coli APEC O1], gi\|11551... gi\|218558748, gi... - gi\|218558748\|ref\|YP_002391661.1\| chemotaxis methyltransferase CheR [Escherichia coli S88], gi\|218365... gi\|218689881, gi... - gi\|218689881\|ref\|YP_002398093.1\| chemotaxis methyltransferase CheR [Escherichia coli ED1a], gi\|21842... gi\|218369531, gi... - gi\|218699545\|ref\|YP_002407174.1\| chemotaxis methyltransferase CheR [Escherichia coli IAI39], gi\|2183... gi\|237705840, gi... - gi\|237705840\|ref\|ZP_04536321.1\| chemotaxis regulator [Escherichia sp. 3_2_53FAA], gi\|226900597\|gb\|EE... gi\|91211109, gi\|... - gi\|91211109\|ref\|YP_541095.1\| chemotaxis methyltransferase CheR [Escherichia coli UTI89], gi\|91072683...	335.0	[0..5]	[288..8]
gi\|145523 - gi\|145523\|gb\|AAA23568.1\| cheR protein [Escherichia coli]	335.0	[0..5]	[288..8]
gi\|110343593, gi... - gi\|110642001\|ref\|YP_669731.1\| chemotaxis methyltransferase CheR [Escherichia coli 536], gi\|110343593... gi\|191173021, gi... - gi\|191173021\|ref\|ZP_03034555.1\| chemotaxis protein methyltransferase CheR [Escherichia coli F11], gi... gi\|215487096, gi... - gi\|215487096\|ref\|YP_002329527.1\| chemotaxis methyltransferase CheR [Escherichia coli O127:H6 str. E2...	334.0	[0..5]	[288..8]
gi\|26248151, gi\|... - gi\|26248151\|ref\|NP_754191.1\| chemotaxis methyltransferase CheR [Escherichia coli CFT073], gi\|2610855...	334.0	[0..5]	[288..8]
gi\|10566571 - gi\|10566571\|dbj\|BAB15839.1\| CheR [Enterobacter cloacae]	334.0	[0..5]	[288..8]
EG10148 - chemotaxis regulator, protein-glutamate methyltransferase / Chemotaxis MCP protein methyltransferase... CHER_ECOLI - Chemotaxis protein methyltransferase (EC 2.1.1.80) - Escherichia coli gi\|89108724, gi\|... - gi\|89108724\|ref\|AP_002504.1\| chemotaxis regulator [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|238860144, gi... - gi\|238901099\|ref\|YP_002926895.1\| chemotaxis regulator, protein-glutamate methyltransferase [Escheric... EG10148 - chemotaxis regulator, protein-glutamate methyltransferase / Chemotaxis MCP protein methyltransferase... gi\|188487614, gi... - gi\|188492415\|ref\|ZP_02999685.1\| chemotaxis protein methyltransferase CheR [Escherichia coli 53638], ... gi\|169889375, gi... - gi\|170081540\|ref\|YP_001730860.1\| chemotaxis regulator, protein-glutamate methyltransferase [Escheric... gi\|157161356, gi... - gi\|157161356\|ref\|YP_001458674.1\| chemotaxis methyltransferase CheR [Escherichia coli HS], gi\|1570670...	333.0	[0..5]	[288..8]
gi\|13362062, gi\|... - gi\|15831848\|ref\|NP_310621.1\| chemotaxis methyltransferase CheR [Escherichia coli O157:H7 str. Sakai]... gi\|217317950, gi... - gi\|217328603\|ref\|ZP_03444684.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 ... gi\|209400250, gi... - gi\|209400250\|ref\|YP_002270968.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7... gi\|254793508, gi... - gi\|254793508\|ref\|YP_003078345.1\| chemotaxis regulator, protein-glutamate methyltransferase [Escheric... gi\|189376034, gi... - gi\|189376034\|gb\|EDU94450.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|189370693, gi... - gi\|189370693\|gb\|EDU89109.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|188999442, gi... - gi\|188999442\|gb\|EDU68428.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|168776565, gi... - gi\|187768093\|gb\|EDU31937.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|209767260, gi... - pir\|\|F85801 response regulator for chemotaxis [imported] - Escherichia coli (strain O157:H7, substra... gi\|208740236, gi... - gi\|208820113\|ref\|ZP_03260433.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 ... gi\|208731245, gi... - gi\|208816902\|ref\|ZP_03258022.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 ... gi\|15802296, gi\|... - gi\|15802296\|ref\|NP_288321.1\| chemotaxis methyltransferase CheR [Escherichia coli O157:H7 EDL933], gi... gi\|208810789, gi... - gi\|208810789\|ref\|ZP_03252665.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 ... gi\|13362062, gi\|... - gi\|15831848\|ref\|NP_310621.1\| response regulator for chemotaxis [Escherichia coli O157:H7], gi\|133620... gi\|195939588 - gi\|195939588\|ref\|ZP_03084970.1\| chemotaxis methyltransferase CheR [Escherichia coli O157:H7 str. EC4... gi\|189360321, gi... - gi\|189360321\|gb\|EDU78740.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|189367346, gi... - gi\|189367346\|gb\|EDU85762.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|189355173, gi... - gi\|189355173\|gb\|EDU73592.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str.... gi\|188017379, gi... - gi\|188017379\|gb\|EDU55501.1\| chemotaxis protein methyltransferase CheR [Escherichia coli O157:H7 str....	333.0	[0..5]	[288..8]
CHER_SALTY - Chemotaxis protein methyltransferase OS=Salmonella typhimurium GN=cheR PE=1 SV=1 CHER_SALTY - Chemotaxis protein methyltransferase OS=Salmonella typhimurium GN=cheR PE=1 SV=1 gi\|62180495, gi\|... - gi\|62180495\|ref\|YP_216912.1\| chemotaxis methyltransferase CheR [Salmonella enterica subsp. enterica ... gi\|56413162, gi\|... - gi\|56413162\|ref\|YP_150237.1\| chemotaxis methyltransferase CheR [Salmonella enterica subsp. enterica ... gi\|206708364, gi... - gi\|207856561\|ref\|YP_002243212.1\| chemotaxis methyltransferase CheR [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=cheR] [protein=chemotaxis methyltransferase CheR] [protein_id=YP_005237886.1] [location=comple... gi\|197243583, gi... - gi\|197265328\|ref\|ZP_03165402.1\| chemotaxis protein methyltransferase CheR [Salmonella enterica subsp... gi\|194446749, gi... - gi\|194446749\|ref\|YP_002041184.1\| chemotaxis protein methyltransferase CheR [Salmonella enterica subs... gi\|168462547, gi... - gi\|195634579\|gb\|EDX52931.1\| chemotaxis protein methyltransferase CheR [Salmonella enterica subsp. en... gi\|161362886, gi... - gi\|161613522\|ref\|YP_001587487.1\| chemotaxis methyltransferase CheR [Salmonella enterica subsp. enter... gi\|205360297, gi... - gi\|205360297\|ref\|ZP_02681776.2\| chemotaxis protein methyltransferase CheR [Salmonella enterica subsp... CHER_SALTY - Chemotaxis protein methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|205327862, gi... - gi\|205358057\|ref\|ZP_02575316.2\| chemotaxis protein methyltransferase CheR [Salmonella enterica subsp... gi\|200390528, gi... - gi\|200390528\|ref\|ZP_03217139.1\| chemotaxis protein methyltransferase CheR [Salmonella enterica subsp... gi\|197362088, gi... - gi\|197362088\|ref\|YP_002141725.1\| chemotaxis methyltransferase CheR [Salmonella enterica subsp. enter...	331.0	[0..5]	[288..8]
gi\|48845933, gi\|... - gi\|78223623\|ref\|YP_385370.1\| MCP methyltransferase, CheR-type [Geobacter metallireducens GS-15], gi\|...	330.0	[0..8]	[291..4]
gi\|74311766, gi\|... - gi\|74311766\|ref\|YP_310185.1\| chemotaxis methyltransferase CheR [Shigella sonnei Ss046], gi\|73855243\|...	330.0	[0..5]	[288..8]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGGMFSAA TDRITTAAMT DREFARFSEF IYDTCGIKMP PVKKTMLEAR LQKRLRKLGI  60
   61 SSFKDYSEYL FSRTGTETEL VHLIDVVTTN KTDFFREPAH FDYLVSQALP ELMERTGAGL 120
  121 RKPLSIWSAG CSSGEEPYTL AMVLSEFSEQ QNISFSILAT DICTTVLDKA RLAVYDEERI 180
  181 DPVPMSLRRK YLLRGKGEQK GLVRVVPQLR HRITFRRLNF MDGDFGMREP MDIIFCRNVV 240
  241 IYFDKATQER LLNKFYRQLI PGGYLFMGHS ETLSGLDVPF VQMASTVYRK PL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.30103
Match:	1af7A
Description:	CHER FROM SALMONELLA TYPHIMURIUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.05991383541555	bayes_pls_golite062009
methyltransferase activity	1.04943568976829	bayes_pls_golite062009
O-methyltransferase activity	0.85422125054835	bayes_pls_golite062009
protein-glutamate O-methyltransferase activity	0.5118916412645	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.414568039011584	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: