YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996244, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996244, gi|....

Description	E-value	Query Range	Subject Range
gi\|78223624, gi\|... - gi\|78223624\|ref\|YP_385371.1\| CheW protein [Geobacter metallireducens GS-15], gi\|78194879\|gb\|ABB32646...	146.0	[0..1]	[164..15]
gi\|39996401, gi\|... - gi\|39996401\|ref\|NP_952352.1\| purine-binding chemotaxis protein CheW [Geobacter sulfurreducens PCA], ...	145.0	[0..1]	[164..1]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	137.0	[0..2]	[159..10]
gi\|85859028, gi\|... - gi\|85859028\|ref\|YP_461230.1\| chemotaxis protein [Syntrophus aciditrophicus SB], gi\|85722119\|gb\|ABC77...	136.0	[0..11]	[158..22]
gi\|83589593, gi\|... - gi\|83589593\|ref\|YP_429602.1\| CheW protein [Moorella thermoacetica ATCC 39073], gi\|83572507\|gb\|ABC190...	135.0	[0..6]	[156..5]
gi\|71742747, gi\|... - gi\|71836535\|ref\|ZP_00676303.1\| CheW-like protein [Pelobacter propionicus DSM 2379], gi\|71742747\|gb\|E...	135.0	[0..1]	[157..1]
gi\|69945123, gi\|... - gi\|91794646\|ref\|YP_564297.1\| CheW-like protein [Shewanella denitrificans OS217], gi\|91716648\|gb\|ABE5...	135.0	[0..4]	[160..15]
gi\|88778905, gi\|... - gi\|88798465\|ref\|ZP_01114050.1\| purine-binding chemotaxis protein CheW [Reinekea sp. MED297], gi\|8877...	134.0	[0..3]	[163..11]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTTITETR QYLTFKLDDE VFAVDVAKVR EILELTSITK VPQTPQFMRG VINLRGSVVP  60
   61 VVDLRLKFGM SETAPTVDTC IIVVEVAHEH ETLVLGALAD SVQEVFEMEP GQVEPAPRIG 120
  121 TKLNTDFILG MGKHDGQFIM ILDIDRTFTS DELATAGSVS GEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits