YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996220, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996220, gi|....

Description	E-value	Query Range	Subject Range
gi\|48846987, gi\|... - gi\|78223874\|ref\|YP_385621.1\| hypothetical protein Gmet_2678 [Geobacter metallireducens GS-15], gi\|78...	138.0	[0..1]	[148..1]
Y531_METJA - Uncharacterized protein MJ0531 OS=Methanocaldococcus jannaschii GN=MJ0531 PE=3 SV=1 Y531_METJA - Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	137.0	[0..4]	[148..26]
gi\|21226926, gi\|... - gi\|21226926\|ref\|NP_632848.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905235\|gb\|AAM...	133.0	[0..4]	[148..6]
gi\|68212208, gi\|... - gi\|91774262\|ref\|YP_566954.1\| hypothetical protein Mbur_2350 [Methanococcoides burtonii DSM 6242], gi...	133.0	[0..4]	[148..6]
gi\|72395196, gi\|... - gi\|73668034\|ref\|YP_304049.1\| universal stress protein [Methanosarcina barkeri str. Fusaro], gi\|72395...	133.0	[0..1]	[148..1]
gi\|20092887, gi\|... - gi\|20092887\|ref\|NP_618962.1\| universal stress protein [Methanosarcina acetivorans C2A], gi\|19918195\|...	131.0	[0..4]	[148..6]
gi\|71741705, gi\|... - gi\|71837827\|ref\|ZP_00677590.1\| Usp domain [Pelobacter propionicus DSM 2379], gi\|71741705\|gb\|EAO36860...	128.0	[0..1]	[145..1]
gi\|44920905, gi\|... - gi\|45358148\|ref\|NP_987705.1\| UspA domain-containing protein [Methanococcus maripaludis S2], gi\|44920...	128.0	[0..2]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPFSTIVFP TDFSENSEYA FDYALTLAKQ FSARLVVIHV INEPVDLRGF YVPHVSFEKL  60
   61 EEEIVAAAEK MMDKFCRTKI KDHENYTSCI VSGIPYDEVL KKAAEEDASL IVMGTHGRKG 120
  121 IDHFLFGSTA ERVVRNAKCP VMTVRPPEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.432879758487135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: