YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996130, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996130, gi|....

Description	E-value	Query Range	Subject Range
gi\|78221930, gi\|... - gi\|78221930\|ref\|YP_383677.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Geoba...	310.0	[0..1]	[294..1]
gi\|114320600, gi... - gi\|78700084\|ref\|ZP_00864541.1\| glycosyl hydrolase, family 10 [Alkalilimnicola ehrlichei MLHE-1], gi\|...	303.0	[0..1]	[294..1]
gi\|222055437, gi... - gi\|222055437\|ref\|YP_002537799.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [G...	299.0	[0..1]	[294..1]
gi\|88860093, gi\|... - gi\|88860093\|ref\|ZP_01134732.1\| Beta-ureidopropionase [Pseudoalteromonas tunicata D2], gi\|88818087\|gb...	298.0	[0..1]	[294..1]
gi\|77918622, gi\|... - gi\|77918622\|ref\|YP_356437.1\| amidohydrolase [Pelobacter carbinolicus DSM 2380], gi\|77544705\|gb\|ABA88...	297.0	[0..1]	[294..1]
gi\|77360775, gi\|... - gi\|77360775\|ref\|YP_340350.1\| Beta-ureidopropionase [Pseudoalteromonas haloplanktis TAC125], gi\|76875...	296.0	[0..3]	[294..6]
gi\|118501885, gi... - gi\|71838410\|ref\|ZP_00678169.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pel...	296.0	[0..1]	[294..1]
gi\|67980708, gi\|... - gi\|95929480\|ref\|ZP_01312223.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Des...	295.0	[0..1]	[294..1]
gi\|60493379, gi\|... - gi\|60681945\|ref\|YP_212089.1\| putative hydrolase [Bacteroides fragilis NCTC 9343], gi\|60493379\|emb\|CA... gi\|52216537, gi\|... - gi\|53713672\|ref\|YP_099664.1\| beta-ureidopropionase [Bacteroides fragilis YCH46], gi\|52216537\|dbj\|BAD... gi\|253565620, gi... - gi\|253565620\|ref\|ZP_04843075.1\| beta-ureidopropionase [Bacteroides sp. 3_2_5], gi\|251945899\|gb\|EES86...	294.0	[0..1]	[294..1]
gi\|29338180, gi\|... - gi\|29346285\|ref\|NP_809788.1\| beta-ureidopropionase [Bacteroides thetaiotaomicron VPI-5482], gi\|29338...	292.0	[0..1]	[294..1]

Back

Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSVALVQ QSCTADKDLN LAKSIENIRK ASVLGAKLVV LQELHTGPYF CQNEDTAHFD  60
   61 LAEPIPGPTT ELLGGVAKEF GVVLVSSLFE RRAPGLYHNT AVVFEKDGSM AGTYRKMHIP 120
  121 DDPGYYEKFY FTPGDLGFEP IRTSVGKLGV LVCWDQWYPE AARLMALAGA DLLIYPTAIG 180
  181 WDPRDDDDEK IRQKEAWITI QRGHAVANGI PVVSVNRVGH ESDPSGVLPG SQFWGSSFVA 240
  241 GPQGEILAQA SNDGEELLIT ELDLARSEAV RRIWPFLRDR RIDAYGDLLR RYRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: