YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996089, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996089, gi|....

Description	E-value	Query Range	Subject Range
gi\|23128973, gi\|... - gi\|23128973\|ref\|ZP_00110809.1\| COG3628: Phage baseplate assembly protein W [Nostoc punctiforme PCC 7...	147.0	[0..6]	[130..4]
gi\|37526415, gi\|... - gi\|37526415\|ref\|NP_929759.1\| hypothetical protein plu2523 [Photorhabdus luminescens subsp. laumondii...	144.0	[0..6]	[117..8]
gi\|37520982, gi\|... - gi\|37520982\|ref\|NP_924359.1\| hypothetical protein gll1413 [Gloeobacter violaceus PCC 7421], gi\|35211...	142.0	[0..3]	[133..11]
gi\|14026231, gi\|... - gi\|14026231\|dbj\|BAB52829.1\| mlr6561 [Mesorhizobium loti MAFF303099], gi\|13475479\|ref\|NP_107043.1\| hy...	141.0	[0..1]	[132..1]
gi\|146300902, gi... - gi\|90587710\|ref\|ZP_01243363.1\| GPW/gp25 [Flavobacterium johnsoniae UW101], gi\|90436659\|gb\|EAS62015.1...	140.0	[0..1]	[132..1]
gi\|21222640, gi\|... - gi\|7242766\|emb\|CAB77339.1\| conserved hypothetical protein SCD8A.18c [Streptomyces coelicolor A3(2)],...	139.0	[0..4]	[132..2]
gi\|71909219, gi\|... - gi\|71909219\|ref\|YP_286806.1\| tail lysozyme, putative [Dechloromonas aromatica RCB], gi\|71848840\|gb\|A...	138.0	[0..3]	[132..7]
gi\|89950291, gi\|... - gi\|90020691\|ref\|YP_526518.1\| tail lysozyme, putative [Saccharophagus degradans 2-40], gi\|89950291\|gb...	137.0	[0..5]	[133..10]
gi\|145558586, gi... - gi\|83370406\|ref\|ZP_00915247.1\| tail lysozyme, putative [Rhodobacter sphaeroides ATCC 17025], gi\|8335...	137.0	[0..6]	[132..4]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKAREFLGT GWKFPVAAGA DGAMVLSSAE EDIAESIRII LGTARGERVM RPDFGCGIHD  60
   61 RVFSVINTTT LGLIENEVKE ALILWEPRIE LLSVTASPRE AAEGRLLIDI EYRVRSTNTR 120
  121 FNLVYPFYLK ESA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2ia7A
Description:	No description for 2ia7A was found.

Predicted functions:

Term	Confidence	Notes
lysozyme activity	3.55569662280116	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: