YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996044, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996044, gi|....

Description	E-value	Query Range	Subject Range
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	259.0	[0..4]	[245..197]
gi\|73668585, gi\|... - gi\|73668585\|ref\|YP_304600.1\| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...	250.0	[0..8]	[248..479]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	248.0	[0..5]	[248..279]
gi\|20809032 - gi\|20809032\|ref\|NP_624203.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20809032, gi\|... - gi\|20809032\|ref\|NP_624203.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	247.0	[0..19]	[248..339]
gi\|19915870, gi\|... - gi\|20090805\|ref\|NP_616880.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	246.0	[0..5]	[246..222]
gi\|21229203, gi\|... - gi\|21229203\|ref\|NP_635125.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	246.0	[0..7]	[246..462]
gi\|42521923, gi\|... - gi\|42521923\|ref\|NP_967303.1\| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100...	245.0	[0..7]	[248..728]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANALAKYIA EKDPVEGELL ELLAFNEKMA ELGRMAAGVV HELNTPLSVI VSATQMILRE  60
   61 EGLPDFVREM VERVNQEAHR LSDMTKGVLS FTRRDVSDHQ EADVNQVLRE AMTLLRYEAH 120
  121 KRSIAVIEDL DYRLPFIAAD ANRAKQVIIN LVMNALQAMG EGGKLFIRTS QNGEGGVTVQ 180
  181 VTDTGPGIPA ELLGHIFTPF FTTKEPGEGT GLGLFITRKL MESVGGAIAV ESTVGEGTSF 240
  241 TLTFVAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits