YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982804, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982804, gi|....

Description	E-value	Query Range	Subject Range
GUAA_MOOTA - GMP synthase [glutamine-hydrolyzing] OS=Moorella thermoacetica (strain ATCC 39073) GN=guaA PE=3 SV=1	190.0	[0..2]	[220..11]
GUAA_LISIN - GMP synthase [glutamine-hydrolyzing] OS=Listeria innocua GN=guaA PE=3 SV=1 GUAA_LISIN - GMP synthase [glutamine-hydrolyzing] OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=guaA PE=3...	189.0	[0..3]	[219..14]
GUAA_BACLD - GMP synthase [glutamine-hydrolyzing] OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 250...	189.0	[0..1]	[208..8]
gi\|57168146, gi\|... - gi\|57168146\|ref\|ZP_00367285.1\| GMP synthase [Campylobacter coli RM2228], gi\|57020520\|gb\|EAL57189.1\| ...	188.0	[0..3]	[219..6]
GUAA_WOLSU - GMP synthase [glutamine-hydrolyzing] OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7... GUAA_WOLSU - GMP synthase [glutamine-hydrolyzing] OS=Wolinella succinogenes GN=guaA PE=3 SV=1	187.0	[0..3]	[211..11]
GUAA_CAMJJ - GMP synthase [glutamine-hydrolyzing] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain ...	187.0	[0..3]	[219..6]
gi\|82401802, gi\|... - gi\|82500177\|ref\|ZP_00885602.1\| GMP synthase, C-terminal:GMP synthase, N-terminal [Caldicellulosirupt...	186.0	[0..2]	[220..5]
GUAA_AQUAE - GMP synthase [glutamine-hydrolyzing] OS=Aquifex aeolicus (strain VF5) GN=guaA PE=3 SV=1 GUAA_AQUAE - GMP synthase [glutamine-hydrolyzing] OS=Aquifex aeolicus GN=guaA PE=3 SV=1	186.0	[0..3]	[209..6]
GUAA_CAMLR - GMP synthase [glutamine-hydrolyzing] OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=...	186.0	[0..3]	[211..6]
gi\|85841879, gi\|... - gi\|86150709\|ref\|ZP_01068925.1\| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94], gi\|85841879...	186.0	[0..3]	[219..6]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVMIQNDSE VPPGIFGDFL REERIPFSLV HPCAGDPLPL PAEVTAAIVL GGAMGVHDTE  60
   61 KHPFLETVKA FIGGCVAAGR PYLGICLGGQ LLADVFGAPV TSGADGEKGT FPVDLTVEGE 120
  121 RDPLFAGIPR RFITFQWHDD TFAVPTGGVL LASSAVCLRQ AFRVGDRAWG LQFHPEVNRE 180
  181 IVGAWARWSG DTAPDAESFL AAFAAAETEY RAASRLMLGN FLVAAGMKRA R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1o1yA
Description:	Hypothetical protein TM1158
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.67435536171189	bayes_pls_golite062009
ligase activity	0.0238422970481118	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.21123699382953E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: