YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982748, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982748, gi|....

Description	E-value	Query Range	Subject Range
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	221.0	[0..1]	[231..1]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	217.0	[0..1]	[232..9]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	216.0	[0..1]	[232..1]
gi\|110801119, gi... - gi\|110801119\|ref\|YP_695076.1\| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...	211.0	[0..1]	[233..1]
gi\|25300922 - pir\|\|G97109 response regulator (CheY-like receiver domain and DNA-binding HTH domain) [imported] - C... gi\|15894977, gi\|... - gi\|15894977\|ref\|NP_348326.1\| response regulator [Clostridium acetobutylicum ATCC 824], gi\|15024664\|g...	211.0	[0..1]	[231..1]
gi\|18144301, gi\|... - gi\|18309624\|ref\|NP_561558.1\| DNA-binding response regulator [Clostridium perfringens str. 13], gi\|18...	210.0	[0..1]	[233..1]
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	210.0	[0..4]	[232..1]
gi\|110682378, gi... - gi\|110801877\|ref\|YP_697936.1\| DNA-binding response regulator [Clostridium perfringens SM101], gi\|110...	208.0	[0..1]	[233..1]
gi\|114566483, gi... - gi\|114566483\|ref\|YP_753637.1\| response regulator receiver protein [Syntrophomonas wolfei subsp. wolf...	206.0	[0..1]	[231..1]
gi\|172059033, gi... - gi\|68055311\|ref\|ZP_00539457.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	206.0	[0..1]	[231..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPKVLIVD DVNLMLELEK SLLRFSPVRV FTARNGEEAL ELVRSERPDL VYMDLNMPKM  60
   61 NGVDCCIAIK SDPELRDTPV IMVTTAGKPE DQELCARAGC DGYITKPVDR RLFLEIGRRY 120
  121 IPDIDRREQR IPFSLPVTCR TEQKELTGTT TDISVGGLYL AIDHGIAREE SVEIAITIPG 180
  181 GGAPVRARGR VAWLNGVDGK VKPRFPSGFG IEFMDISPQD LEQVREFVES LANLSSPGGG 240
  241 SAGTRGTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	2gwrA
Description:	No description for 2gwrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits