YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982676, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982676, gi|....

Description	E-value	Query Range	Subject Range
CITG_PHOPR - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Photobacterium profundum GN=ci... CITG_PHOPR - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Photobacterium profundum (stra...	278.0	[0..1]	[244..44]
gi\|116221606, gi... - gi\|75820952\|ref\|ZP_00750989.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Vibrio cholerae ...	277.0	[0..1]	[246..42]
CITG_VIBCH - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Vibrio cholerae serotype O1 (s... CITG_VIBCH - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Vibrio cholerae GN=citG PE=3 S... gi\|153821397, gi... - gi\|229510744\|ref\|ZP_04400223.1\| 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Vibrio ch... CITG_VIBCM - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Vibrio cholerae serotype O1 (s... gi\|229505584, gi... - gi\|229505584\|ref\|ZP_04395094.1\| 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Vibrio ch... gi\|229344580, gi... - gi\|229517865\|ref\|ZP_04407309.1\| 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Vibrio ch... gi\|229608602, gi... - gi\|229608602\|ref\|YP_002879250.1\| 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Vibrio c... gi\|227117175, gi... - gi\|75826147\|ref\|ZP_00755582.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Vibrio cholerae ... gi\|121631469, gi... - gi\|75816822\|ref\|ZP_00747281.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Vibrio cholerae ...	276.0	[0..1]	[246..42]
gi\|125619691, gi... - gi\|75831959\|ref\|ZP_00761218.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Vibrio cholerae ... tr\|C6YE12\|C6YE12... - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Vibrio cholerae MO10 GN=citG P...	275.0	[0..1]	[246..42]
MDCB_ACICA - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Acinetobacter calcoaceticus GN...	274.0	[0..2]	[245..32]
tr\|D7HEZ3\|D7HEZ3... - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Vibrio cholerae RC385 GN=citG ... gi\|194536525, gi... - gi\|75823898\|ref\|ZP_00753373.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Vibrio cholerae ...	274.0	[0..1]	[243..42]
gi\|41689687, gi\|... - gi\|71065699\|ref\|YP_264426.1\| ATP:dephospho-CoA triphosphoribosyl transferase [Psychrobacter arcticus...	271.0	[0..2]	[245..35]
gi\|2842398 - gi\|2842398\|emb\|CAA71634.1\| CILG, hypothetical protein [Leuconostoc mesenteroides] CITXG_LEUMC - Protein CitXG OS=Leuconostoc mesenteroides subsp. cremoris GN=citXG PE=3 SV=1	270.0	[0..2]	[250..201]
gi\|31322799 - gi\|31322799\|gb\|AAP22391.1\| CitG [Lactococcus lactis subsp. lactis bv. diacetylactis]	270.0	[0..2]	[250..16]
CITG_ECOHS - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O9:H4 (strain HS) GN=c... gi\|170080295, gi... - gi\|170080295\|ref\|YP_001729615.1\| triphosphoribosyl-dephospho-CoA transferase [Escherichia coli str. ... EG13539 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase / 2-(5''-triphosphoribosyl)-3'-dephosphoco... CITG_ECOLI - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3... gi\|251784116, gi... - gi\|251784116\|ref\|YP_002998420.1\| hypothetical protein B21_00570 [Escherichia coli BL21], gi\|24237638... CITG_ECOBW - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli (strain K12 / MC4100 /... gi\|253972595, gi... - gi\|254160694\|ref\|YP_003043802.1\| triphosphoribosyl-dephospho-CoA transferase [Escherichia coli B str... gi\|253325446, gi... - gi\|254287482\|ref\|YP_003053230.1\| triphosphoribosyl-dephospho-CoA transferase [Escherichia coli BL21(... gi\|85674722, gi\|... - gi\|89107480\|ref\|AP_001260.1\| triphosphoribosyl-dephospho-CoA transferase [Escherichia coli str. K-12... gi\|124530187, gi... - gi\|124530187\|ref\|ZP_01700936.1\| Triphosphoribosyl-dephospho-CoA synthase [Escherichia coli B], gi\|12... CITG_ECOSE - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli (strain SE11) GN=citG ... CITG_ECOLC - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli (strain ATCC 8739 / DS... gi\|194423626, gi... - gi\|194437457\|ref\|ZP_03069554.1\| triphosphoribosyl-dephospho-CoA synthase [Escherichia coli 101-1], g... EG13539 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase / 2-(5''-triphosphoribosyl)-3'-dephosphoco... gi\|193063455, gi... - gi\|193063455\|ref\|ZP_03044545.1\| triphosphoribosyl-dephospho-CoA synthase [Escherichia coli E22], gi\|... gi\|188487654, gi... - gi\|188492455\|ref\|ZP_02999725.1\| triphosphoribosyl-dephospho-CoA synthase [Escherichia coli 53638], g... CITG_ECO55 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli (strain 55989 / EAEC) ... CITG_ECO8A - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O8 (strain IAI1) GN=ci...	264.0	[0..2]	[246..32]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYLTPKPG LVDMANQGSH PDLTLDKMER SLHILGDYLA ELIRSLTDGE RFLCQAVIGR  60
   61 RAEEVMMEEL GSNTLKGYFF LSGLLLVARW RCDSDDEKRL SRAVSELGEE FFALRREQAT 120
  121 NGHSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.874	0.005	lyase activity	a.24.3	Cytochromes

Predicted Domain #2

Region A:
Residues: [126-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSRFGTGGVV HEVLDGLPSL FTCAVPVYLA AIERTGCFTS ASFAMLARLM QTVDDTTTLH  60
   61 RCGTMGLARL RRDGQTLERL IAEGGDPVAF LTELDRKYVR MNLTMGGVAD VLGLAYGYLV 120
  121 ATGRLAGASE TTRSRNSKPR LRLCMGDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits