YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995893, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	57 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995893, gi|....

Description	E-value	Query Range	Subject Range
TATA_ARATH - Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana GN=TATA PE=1...	80.0	[0..1]	[57..63]
gi\|186466890, gi... - gi\|23129516\|ref\|ZP_00111343.1\| COG1826: Sec-independent protein secretion pathway components [Nostoc...	80.0	[0..1]	[56..3]
gi\|85716194, gi\|... - gi\|85716194\|ref\|ZP_01047169.1\| twin-arginine translocation protein TatB [Nitrobacter sp. Nb-311A], g...	80.0	[0..1]	[57..1]
TATB_NITWN - Sec-independent protein translocase protein TatB OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 2...	80.0	[0..1]	[57..1]
gi\|87283511, gi\|... - gi\|87301943\|ref\|ZP_01084777.1\| twin-arginine translocation protein, TatA/E family protein [Synechoco...	79.0	[0..2]	[55..4]
TATA_ORYSJ - Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	79.0	[0..1]	[56..84]
TATA_SYNE7 - Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) GN=tat... TATA_SYNP6 - Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 ...	78.0	[0..2]	[55..4]
gi\|67923730, gi\|... - gi\|67923730\|ref\|ZP_00517196.1\| Twin-arginine translocation protein TatA/E [Crocosphaera watsonii WH ...	78.0	[0..2]	[56..4]
gi\|77689453, gi\|... - gi\|91977259\|ref\|YP_569918.1\| twin-arginine translocation protein TatB [Rhodopseudomonas palustris Bi...	78.0	[0..1]	[57..15]
gi\|67927738, gi\|... - gi\|67927738\|ref\|ZP_00520929.1\| sec-independent translocation protein mttA/Hcf106 [Solibacter usitatu...	78.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGFGMPEMI IILVIALVVV GPSKLPQLGQ ALGSSIKSFK KGMNEDEVKV INKTNEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.619789
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.690	N/A	N/A	a.10.2	Description not found.
View	Download	0.679	N/A	N/A	a.10.2	Description not found.
View	Download	0.654	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.608	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.604	N/A	N/A	a.7.17	Description not found.
View	Download	0.596	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.590	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.581	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.578	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.495	N/A	N/A	a.65.1	Annexin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits