YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982651, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982651, gi|....

Description	E-value	Query Range	Subject Range
TATB_BORA1 - Sec-independent protein translocase protein TatB OS=Bordetella avium (strain 197N) GN=tatB PE=3 SV=1	81.0	[0..1]	[58..1]
gi\|67927738, gi\|... - gi\|67927738\|ref\|ZP_00520929.1\| sec-independent translocation protein mttA/Hcf106 [Solibacter usitatu...	81.0	[0..1]	[58..1]
TATB_PSYAR - Sec-independent protein translocase protein tatB homolog - Psychrobacter arcticum TATB_PSYA2 - Sec-independent protein translocase protein TatB OS=Psychrobacter arcticus (strain DSM 17307 / 273-4...	80.0	[0..1]	[58..1]
TATB_PSYCK - Sec-independent protein translocase protein TatB OS=Psychrobacter cryohalolentis (strain K5) GN=tatB...	80.0	[0..1]	[58..1]
gi\|186466890, gi... - gi\|23129516\|ref\|ZP_00111343.1\| COG1826: Sec-independent protein secretion pathway components [Nostoc...	80.0	[0..1]	[58..3]
gi\|1652105, gi\|1... - gi\|1652105\|dbj\|BAA17030.1\| slr1046 [Synechocystis sp. PCC 6803], gi\|16329622\|ref\|NP_440350.1\| hypoth... gi\|7470329 - pir\|\|S74990 hypothetical protein slr1046 - Synechocystis sp. (strain PCC 6803)	79.0	[0..1]	[58..44]
TATB_BORPE - Sec-independent protein translocase protein TatB OS=Bordetella pertussis GN=tatB PE=3 SV=1 TATB_BORPE - Sec-independent protein translocase protein TatB OS=Bordetella pertussis (strain Tohama I / ATCC BAA...	79.0	[0..1]	[58..1]
gi\|87283511, gi\|... - gi\|87301943\|ref\|ZP_01084777.1\| twin-arginine translocation protein, TatA/E family protein [Synechoco...	79.0	[0..2]	[57..4]
gi\|67923730, gi\|... - gi\|67923730\|ref\|ZP_00517196.1\| Twin-arginine translocation protein TatA/E [Crocosphaera watsonii WH ...	78.0	[0..2]	[58..4]
gi\|85716194, gi\|... - gi\|85716194\|ref\|ZP_01047169.1\| twin-arginine translocation protein TatB [Nitrobacter sp. Nb-311A], g...	78.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGFGMPEMI IILVIALVVF GPGKLPQLGQ SLGASIRNFK KASLEEPEKI TVKEKDEHA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.721246
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.691	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.565	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.514	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.513	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.505	N/A	N/A	a.221.1	Description not found.
View	Download	0.505	N/A	N/A	a.221.1	Description not found.
View	Download	0.483	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.482	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.466	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.458	N/A	N/A	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits