YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982642, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982642, gi|....

Description	E-value	Query Range	Subject Range
gi\|20906133, gi\|... - gi\|21227734\|ref\|NP_633656.1\| iron-sulfur flavoprotein [Methanosarcina mazei Go1], gi\|20906133\|gb\|AAM...	154.0	[0..1]	[187..1]
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	152.0	[0..1]	[192..1]
gi\|20089230, gi\|... - gi\|20089230\|ref\|NP_615305.1\| iron-sulfur flavoprotein [Methanosarcina acetivorans C2A], gi\|19914107\|...	151.0	[0..1]	[189..1]
gi\|44921232, gi\|... - gi\|45358474\|ref\|NP_988031.1\| iron-sulfur flavoprotein [Methanococcus maripaludis S2], gi\|44921232\|em...	148.0	[0..1]	[192..1]
gi\|72396066, gi\|... - gi\|73668904\|ref\|YP_304919.1\| iron-sulfur flavoprotein [Methanosarcina barkeri str. Fusaro], gi\|72396...	147.0	[0..1]	[189..1]
gi\|91712678, gi\|... - gi\|91773663\|ref\|YP_566355.1\| NADPH-dependent FMN reductase [Methanococcoides burtonii DSM 6242], gi\|...	145.0	[0..1]	[189..2]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVTLLGSP RSRGISAAIA ARFTDTAAGL GAQTRTFELN RLAYRGCQGC YACKKTLDHC  60
   61 VLTDDLAQVL DAVRGADVVV LASPVYYGDV TAQLKGFIDR TFSYLKPDYL SNPQPSRLSP 120
  121 KKLVFVLTQG HPDEGMFADI FPRYEGFLTW LGFVDARLIR ACGFGPSTVD KVPEQYLREA 180
  181 EQAAREIVGQ GKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1v4bA
Description:	The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits