YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982601, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982601, gi|....

Description	E-value	Query Range	Subject Range
LPXC_HISS2 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Histophilus somni (strain 2336) GN=lpxC PE=3 SV=1	430.0	[0..4]	[274..3]
LPXC_HAES1 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus somnus (strain 129Pt) GN=lpxC PE=3 SV=1	430.0	[0..4]	[273..3]
LPXC_PASMU - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Pasteurella multocida GN=lpxC PE=3 S... LPXC_PASMU - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Pasteurella multocida (strain Pm70) GN=lpxC PE=3 SV=...	429.0	[0..4]	[273..3]
LPXC_HAEI8 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus influenzae (strain 86-028NP) GN=lpxC PE=...	429.0	[0..4]	[273..3]
LPXC_MANSM - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=lp...	426.0	[0..4]	[273..3]
gi\|42631446 - gi\|42631446\|ref\|ZP_00156984.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Haemophilus in... gi\|145271639, gi... - gi\|145639336\|ref\|ZP_01794942.1\| hypothetical protein CGSHiII_01259 [Haemophilus influenzae PittII], ... gi\|144979661, gi... - gi\|145627886\|ref\|ZP_01783687.1\| hypothetical protein CGSHi22121_02575 [Haemophilus influenzae 22.1-2...	426.0	[0..4]	[273..3]
gi\|149748188, gi... - gi\|153838425\|ref\|ZP_01991092.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Vibrio parahaemolyticu... LPXC_VIBPA - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD ... LPXC_VIBPA - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Vibrio parahaemolyticus GN=lpxC PE=3...	426.0	[0..4]	[273..3]
LPXC_HAEIN - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Haemophilus influenzae GN=lpxC PE=3 ... LPXC_HAEIN - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1112...	426.0	[0..4]	[273..3]
gi\|91226831, gi\|... - gi\|91226831\|ref\|ZP_01261484.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio ...	425.0	[0..4]	[273..3]
gi\|36786947, gi\|... - gi\|37527512\|ref\|NP_930856.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Photorhab...	425.0	[0..4]	[274..8]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKRQTTINR IFKLSGIGLH TGREVTLEFI PRREFGIAFV YQGQLIPARY DMVADTRLST  60
   61 QIAADGKSVS TIEHLMAAFY YSGITNCLVY IDGPEVPIMD GSAWEFYHEI WRAGVYEFPE 120
  121 TGVYLKVLRP VEVSHNDAWV RVKPLNTLDI TMTIEFRPPV GKQRKRLMDV ENAVSIINSR 180
  181 TFVLHEEIEA IRKAGLAKGG SLDNAVVIGG EEILNPNGLR YKKELVNHKI LDLIGDLFTC 240
  241 GYRMLGKVEA NKTGHYLNNR LLREIFADPD NYAIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.09691
Match:	1xxeA
Description:	RDC refined solution structure of the AaLpxC/TU-514 complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	3.46483388226683	bayes_pls_golite062009
catalytic activity	1.24889475603062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: