YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982590, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982590, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195065, gi\|... - gi\|78223810\|ref\|YP_385557.1\| twin-arginine translocation pathway signal [Geobacter metallireducens G...	210.0	[0..1]	[160..1]
gi\|148264259, gi... - gi\|88937746\|ref\|ZP_01143292.1\| Twin-arginine translocation pathway signal [Geobacter uraniumreducens...	166.0	[0..1]	[158..1]
DFX_ARCFU, DESR_... - Desulfoferrodoxin homolog OS=Archaeoglobus fulgidus GN=AF_0833 PE=3 SV=1, (O29425) Desulfoferrodoxin... DFX_ARCFU - Desulfoferrodoxin homolog OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628...	149.0	[0..15]	[152..11]
DFX_DESVH - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dfx ... gi\|241878479, gi... - gi\|241909146\|ref\|ZP_04793699.1\| desulfoferrodoxin [Desulfovibrio vulgaris RCH1], gi\|241878479\|gb\|EER... gi\|66409, gi\|145... - gi\|758676\|gb\|AAA64797.1\| rubredoxin oxidoreductase [Desulfovibrio vulgaris str. Hildenborough], pir\|... gi\|120601255, gi... - gi\|120601255\|ref\|YP_965655.1\| desulfoferrodoxin [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|120...	146.0	[0..17]	[153..13]
gi\|67980851, gi\|... - gi\|95929752\|ref\|ZP_01312493.1\| desulfoferrodoxin [Desulfuromonas acetoxidans DSM 684], gi\|95134048\|g...	146.0	[0..16]	[153..12]
gi\|1020403 - gi\|1020403\|dbj\|BAA11174.1\| desulfoferrodoxin [Desulfovibrio vulgaris] DFX_DESVM - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dfx PE=3 SV=2	146.0	[0..17]	[152..13]
DFX_METTH - Desulfoferrodoxin homolog OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / ... gi\|7433366, gi\|3... - pir\|\|B69201 rubredoxin-NAD+ reductase (EC 1.18.1.1) - Methanobacterium thermoautotrophicum (strain D...	146.0	[0..16]	[150..12]
DFX_DESBR, DESR_... - Desulfoferrodoxin OS=Desulfoarculus baarsii GN=dfx PE=1 SV=3, (Q46495) Desulfoferrodoxin (EC 1.15.-.... DFX_DESBR - Desulfoferrodoxin OS=Desulfarculus baarsii GN=dfx PE=1 SV=3 DFX_DESB2 - Desulfoferrodoxin OS=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) GN=df...	144.0	[0..16]	[153..12]
gi\|93451530, gi\|... - gi\|94268618\|ref\|ZP_01291234.1\| Desulfoferrodoxin [delta proteobacterium MLMS-1], gi\|94264843\|ref\|ZP_...	144.0	[0..17]	[152..13]

Back

Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRTFLKTA ALGAMAAGIA REAAAAGRYY PVKADQSLFE TINRAKDPAK KSPLEQKHVP  60
   61 VITAPKAVKA GEPFTVEVAV GEVVHPMGPT HWIQFIELNV GNEPAGRVDM QPRGFLSPKA 120
  121 TFTVTIPKEA APEGKITLVV NERCNLHGYW EGSIDIAVTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	2ji1A
Description:	No description for 2ji1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits