YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982575, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982575, gi|....

Description	E-value	Query Range	Subject Range
gi\|83857085, gi\|... - gi\|83857085\|ref\|ZP_00950613.1\| putative membrane protein [Croceibacter atlanticus HTCC2559], gi\|8384...	203.0	[0..11]	[274..747]
gi\|91215719, gi\|... - gi\|91215719\|ref\|ZP_01252689.1\| Cytochrome c assembly protein [Psychroflexus torquis ATCC 700755], gi...	196.0	[0..3]	[274..797]
gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027... gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027...	195.0	[0..7]	[274..775]
gi\|34484157 - gi\|34484157\|emb\|CAE11153.1\| CYTOCHROME C BIOGENESIS PROTEIN (YCF5) [Wolinella succinogenes] gi\|34558438 - gi\|34558438\|ref\|NP_908253.1\| cytochrome c biogenesis protein (ycf5) [Wolinella succinogenes DSM 1740...	188.0	[0..12]	[274..635]
gi\|7465201 - pir\|\|H71862 probable cytochrome C-type biogenesis protein - Helicobacter pylori (strain J99) gi\|15612068, gi\|... - gi\|4155589\|gb\|AAD06582.1\| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori J99], g...	188.0	[0..2]	[274..629]
gi\|85821005, gi\|... - gi\|86134142\|ref\|ZP_01052724.1\| cytochrome c assembly protein [Polaribacter sp. MED152], gi\|85821005\|...	188.0	[0..17]	[274..771]
gi\|78390357, gi\|... - gi\|78492614\|ref\|ZP_00844850.1\| Cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris...	187.0	[0..4]	[270..261]
gi\|87249128, gi\|... - gi\|87305824\|ref\|ZP_01087977.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|85843625, gi\|... - gi\|86152740\|ref\|ZP_01070945.1\| nrfi protein [Campylobacter jejuni subsp. jejuni HB93-13], gi\|8584362...	187.0	[0..2]	[274..768]
gi\|57018869, gi\|... - gi\|57240528\|ref\|ZP_00368477.1\| cytochrome c biogenesis protein (ycf5) [Campylobacter lari RM2100], g...	187.0	[0..7]	[274..726]
gi\|57237900, gi\|... - gi\|57237900\|ref\|YP_179148.1\| CcmF/CcyK/CcsA family cytochrome c biogenesis protein [Campylobacter je...	187.0	[0..2]	[274..768]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQASVYVA MNWLAVCCYV VATVLNASGI IFRKAVVEQR SYWPLWLGLA VHSVSLVYWW  60
   61 RVVGHGPYMA PSEVLLSDAW IAMVLFLGFQ RVFPRIRPTS LIVVPLVFLM VALANFYNPG 120
  121 IRSLPPTFSS IWLVLHISFY KIALGALIIA LAFSIFYLLK ARPAPPDWLR RLPDLEDLDL 180
  181 HAYRFAGFGF IFWAIGMLAG SIWAYKSWGR YWGWDPVETW SLITWLIFGT YLHLRRFFRM 240
  241 GGRAAAWFFI FGFIVALVAL FASSHMGTSI HSEYFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.69897
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits