YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995790, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995790, gi|....

Description	E-value	Query Range	Subject Range
gi\|39996401, gi\|... - gi\|39996401\|ref\|NP_952352.1\| purine-binding chemotaxis protein CheW [Geobacter sulfurreducens PCA], ...	144.0	[0..1]	[164..1]
gi\|78223624, gi\|... - gi\|78223624\|ref\|YP_385371.1\| CheW protein [Geobacter metallireducens GS-15], gi\|78194879\|gb\|ABB32646...	140.0	[0..1]	[164..15]
gi\|85859028, gi\|... - gi\|85859028\|ref\|YP_461230.1\| chemotaxis protein [Syntrophus aciditrophicus SB], gi\|85722119\|gb\|ABC77...	139.0	[0..11]	[156..22]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	137.0	[0..8]	[158..16]
gi\|88778905, gi\|... - gi\|88798465\|ref\|ZP_01114050.1\| purine-binding chemotaxis protein CheW [Reinekea sp. MED297], gi\|8877...	136.0	[0..3]	[163..11]
tr\|Q888V5\|Q888V5... - Chemotaxis protein CheW OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cheW-1 PE=4 SV=1 gi\|28851368, gi\|... - gi\|28868131\|ref\|NP_790750.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213970200, gi... - gi\|213970200\|ref\|ZP_03398331.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato T1], gi\|213...	135.0	[0..7]	[164..15]
gi\|110548619, gi... - gi\|222055358\|ref\|YP_002537720.1\| CheW protein [Geobacter sp. FRC-32], gi\|221564647\|gb\|ACM20619.1\| Ch...	134.0	[0..10]	[164..11]
gi\|83589593, gi\|... - gi\|83589593\|ref\|YP_429602.1\| CheW protein [Moorella thermoacetica ATCC 39073], gi\|83572507\|gb\|ABC190...	134.0	[0..6]	[162..5]
gi\|95930955, gi\|... - gi\|95930955\|ref\|ZP_01313684.1\| CheW protein [Desulfuromonas acetoxidans DSM 684], gi\|95132964\|gb\|EAT...	134.0	[0..1]	[163..1]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHADVTETR QYLTFTLAGE VFAVDVAKVR EILEWSSITK VPQTPEFMRG VINLRGSVVP  60
   61 VIDLRQKFGM PETERSINTC IIVVEVETGA ETLVLGMLAD SVQEVFELES GNIEPAPRIG 120
  121 TKLDTSFLKG MGKHGDAFLI ILDIDRVFGG DDLAGLAAAG EAAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits