YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|86282729, gi\|... - gi\|86358627\|ref\|YP_470519.1\| 50S ribosomal protein L25 [Rhizobium etli CFN 42], gi\|86282729\|gb\|ABC91...	230.0	[0..2]	[187..33]
RL25_METFK - 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplY...	229.0	[0..4]	[186..3]
gi\|71275258, gi\|... - gi\|71275258\|ref\|ZP_00651545.1\| Ribosomal protein L25 [Xylella fastidiosa Dixon], gi\|71164067\|gb\|EAO1... RL25_XYLFM - 50S ribosomal protein L25 OS=Xylella fastidiosa (strain M12) GN=rplY PE=3 SV=1 gi\|71728035, gi\|... - gi\|71902209\|ref\|ZP_00684221.1\| Ribosomal protein L25 [Xylella fastidiosa Ann-1], gi\|71728035\|gb\|EAO3...	228.0	[0..1]	[194..1]
gi\|24982120, gi\|... - gi\|26987457\|ref\|NP_742882.1\| 50S ribosomal protein L25/general stress protein Ctc [Pseudomonas putid...	227.0	[0..1]	[193..21]
RL25_CUPMC - 50S ribosomal protein L25 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	227.0	[0..4]	[193..1]
gi\|116253213, gi... - gi\|116253213\|ref\|YP_769051.1\| 50S ribosomal protein L25/general stress protein Ctc [Rhizobium legumi...	227.0	[0..2]	[194..4]
gi\|83746829, gi\|... - gi\|83746829\|ref\|ZP_00943876.1\| LSU ribosomal protein L25P [Ralstonia solanacearum UW551], gi\|8372641... gi\|206593627, gi... - gi\|207742239\|ref\|YP_002258631.1\| 50s ribosomal protein l25 (general stress protein ctc) [Ralstonia s... gi\|207727835, gi... - gi\|207727835\|ref\|YP_002256229.1\| 50s ribosomal protein l25 [Ralstonia solanacearum MolK2], gi\|206591...	226.0	[0..4]	[188..1]
gi\|71730260, gi\|... - gi\|71899973\|ref\|ZP_00682119.1\| Ribosomal protein L25 [Xylella fastidiosa Ann-1], gi\|71730260\|gb\|EAO3...	225.0	[0..1]	[194..1]
RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti GN=rplY PE=3 SV=1 RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti (strain MAFF303099) GN=rplY PE=3 SV=1	224.0	[0..2]	[194..4]
RL25_RALSO - 50S ribosomal protein L25 OS=Ralstonia solanacearum GN=rplY PE=3 SV=1 RL25_RALSO - 50S ribosomal protein L25 OS=Ralstonia solanacearum (strain GMI1000) GN=rplY PE=3 SV=1	224.0	[0..4]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKTMSIEL REKNGKGVAR KLRAQDVVPG VVYGKGIEPV SVKVAAKDLA ATIAGEGGLN  60
   61 SLITLSGGGS LNGNIVIVAD MQRNPLKGDI LHVDFHRISL DEKVKVHVPL VMVGTAAGVK 120
  121 EGGMLDVVTY SLDVECLPTA IPEAINVDVT NLAIGHSIHV SELVLPAGIK VLNDPETPIV 180
  181 SIHGKAKEEA PAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1vsaT
Description:	No description for 1vsaT was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits